[gmx-users] Radial orientation distribution in cylindrical geometry

Zuowei Wang wangzw at umich.edu
Fri Apr 24 16:00:45 CEST 2009

Dear All,

I am doing a simulation of aromatic salts interacting with
surfactant  micelles of cylindrical geometry, and would like
to get the radial orientation distributions of the surfactant
and aromatic molecules relative to the normal of the cylindrical
micelle surface, or relative to the central axis of the micelle.

Could anybody give me some suggestions on how to calculate
these quantities by using the available Gromacs analysis tool?

Thanks a lot!

University of Michigan

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