[gmx-users] parameterization of ligand

[Justin A. Lemkul]

subarna thakur wrote:
> Hello
> I have received a parameter of a ligand of a protein from the author 
> of an earlier published work.The parameter is in param.dat format based 
> on ff43a1 force field.  Can anybody plz suggest how and where do I put 
> the parameter file in the gromacs.I am using gromacs 4.0 version.
>  

Chapter 5 of the manual is dedicated to topology format and organization.

-Justin

> Regards
> Subarna
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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