August 2009 Archives by author

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Starting: Sat Aug 1 00:01:17 CEST 2009
Ending: Mon Aug 31 20:17:49 CEST 2009
Messages: 840

[gmx-users] reg mopac gromacs installation Mark Abraham
[gmx-users] very strange domain composition statistics Mark Abraham
[gmx-users] desciption of ffG43a1bon.itp Mark Abraham
[gmx-users] reg mopac gromacs installation Mark Abraham
[gmx-users] parts of protein unfolds during MD simulations Mark Abraham
[gmx-users] Segmentation Fault (Address not mapped) Mark Abraham
[gmx-users] help---How to define new residue in GROMACS? Mark Abraham
[gmx-users] query about simulation of a protein containg a metal ion Mark Abraham
[gmx-users] topology info for specific bond between atoms in different molecules Mark Abraham
[gmx-users] Different force field: Gromacs vs Autodock Mark Abraham
[gmx-users] minimization Mark Abraham
[gmx-users] query regarding ffG43a1bon.itp Mark Abraham
[gmx-users] Energy Minimisation Values Mark Abraham
[gmx-users] Energy Minimisation and Equilibration Problems Mark Abraham
[gmx-users] minimization Mark Abraham
[gmx-users] minimization Mark Abraham
[gmx-users] question about modifying the force field Mark Abraham
[gmx-users] question about mdrun -append Mark Abraham
[gmx-users] Current status of CMAP Mark Abraham
[gmx-users] Assigning Improper Dihedrals to an Index Group Mark Abraham
[gmx-users] HELP:Fatal error: There were 1 error(s) processing your input Mark Abraham
[gmx-users] itp to pdb or gro Mark Abraham
[gmx-users] What are the random factors in mdrun? Mark Abraham
[gmx-users] Strange MPI problems. . . Mark Abraham
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Mark Abraham
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Mark Abraham
[gmx-users] Gromacs in Parallel Mark Abraham
[gmx-users] Re: itp file Mark Abraham
[gmx-users] Re: itp file Mark Abraham
[gmx-users] Help with Testset Mark Abraham
[gmx-users] A bug for MPI of GROMACS? Mark Abraham
[gmx-users] problem during position restraint simulation Mark Abraham
[gmx-users] energy minimization Mark Abraham
[gmx-users] Re: A bug for MPI of GROMACS? Mark Abraham
[gmx-users] Determining the energy of an individual atom. Mark Abraham
[gmx-users] use Xcode to debug Gromacs Mark Abraham
[gmx-users] minimization Mark Abraham
[gmx-users] Determining the energy of an individual atom Mark Abraham
[gmx-users] problem installing gromacs Mark Abraham
[gmx-users] bad bond in polymer Mark Abraham
[gmx-users] bad bond in polymer Mark Abraham
[gmx-users] problem installing gromacs Mark Abraham
[gmx-users] error:Segmentation fault Mark Abraham
[gmx-users] minimization Mark Abraham
[gmx-users] Position Restrain md Mark Abraham
[gmx-users] Position Restrain md Mark Abraham
[Fwd: [gmx-users] preferred/best force fields] Mark Abraham
[gmx-users] Control Atoms for Hydroxide ? Mark Abraham
[gmx-users] Buckingham Potential Mark Abraham
[gmx-users] Invalid command line argument: -np Mark Abraham
[gmx-users] .top file from .gro file Mark Abraham
[gmx-users] pdb2gmx -water-> grompp Mark Abraham
[gmx-users] clustering dynamical structures Mark Abraham
[gmx-users] table.xvg problem Mark Abraham
[gmx-users] error in residue topology Mark Abraham
[gmx-users] .top file from .gro file Mark Abraham
[gmx-users] .top file from .gro file Mark Abraham
[gmx-users] .top file from .gro file Mark Abraham
[gmx-users] pbc = xyz with mdrun -pd ? Mark Abraham
[gmx-users] correlation function Mark Abraham
[gmx-users] A charge group moved too far between two domain decomposition steps Mark Abraham
[gmx-users] tables Mark Abraham
[gmx-users] Normal mode analysis Mark Abraham
[gmx-users] how to create topology file for butane Mark Abraham
[gmx-users] A charge group moved too far between two domain decompostion steps Mark Abraham
[gmx-users] correlation function Mark Abraham
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 Mark Abraham
[gmx-users] Gaussian network model (GNM) ? Mark Abraham
[gmx-users] Graphene Sheet Rolling up into CNT Mark Abraham
[gmx-users] DNA problem Mark Abraham
[gmx-users] correlation function Mark Abraham
[gmx-users] correlation function Mark Abraham
[gmx-users] [Fwd: Please solve my problem] Mark Abraham
[gmx-users] problems with rerun Mark Abraham
[gmx-users] problems with rerun Mark Abraham
[gmx-users] error while executing grompp Mark Abraham
[gmx-users] genion question Mark Abraham
[gmx-users] Mdrun error Mark Abraham
[gmx-users] error while executing grompp Mark Abraham
[gmx-users] HEME-cysteine gromacs simulation Mark Abraham
[gmx-users] table extension Mark Abraham
[gmx-users] is the D G sol of g_sas useless? why? Mark Abraham
[gmx-users] Exploding poly-serine Mark Abraham
[gmx-users] Problem in Energy minimisation for a rigid body system Mark Abraham
[gmx-users] wierd behavior of mdrun Mark Abraham
[gmx-users] optimization of gromacs 4.0.5 on AIX Power6 Mark Abraham
[gmx-users] table extension Mark Abraham
[gmx-users] Re: wierd behavior of mdrun Mark Abraham
[gmx-users] optimization of gromacs 4.0.5 on AIX Power6 Mark Abraham
[gmx-users] wierd behavior of mdrun Mark Abraham
[gmx-users] LINCS Mark Abraham
[gmx-users] grompp crashes when submitted to the cluster Mark Abraham
[gmx-users] grompp results in Segmentation fault Mark Abraham
[gmx-users] protein-dna interaction Mark Abraham
[gmx-users] Re: Gromacs 3.3.1 with acpypi Alan
R: [gmx-users] Supercomputing Center Spitaleri Andrea
[gmx-users] Regarding the 'hangs at "atom 0"' issue with x2top 4.x Vasilii Artyukhov
[gmx-users] Supercomputing Center Negar Ashari Astani
[gmx-users] Supercomputing Center Negar Ashari Astani
[gmx-users] Suggestions for 3D-monitor/glasses for visualizing GROMACS output Marc Baaden
[gmx-users] About Binary mixture Abhishek Banerjee
[gmx-users] Peptide drifting and non-natural amino acids Kirill Bessonov
[gmx-users] RE: Peptide drifting and non-natural amino acids Kirill Bessonov
[gmx-users] analysis of result Samik Bhattacharya
[gmx-users] analysis of result Samik Bhattacharya
[gmx-users] analysis of result Samik Bhattacharya
[gmx-users] problem installing gromacs Samik Bhattacharya
[gmx-users] error in Deuterium order analysis Samik Bhattacharya
[gmx-users] Re: Current status of CMAP Pär Bjelkmar
[gmx-users] Re: Free Energy Calculation Floris Buelens
[gmx-users] Re: Free Energy Calculation Floris Buelens
[gmx-users] Re: Re: FEP problem with lambda perturbation 1 to 0.95 Floris Buelens
[gmx-users] Re: Re: FEP problem with lambda perturbation 1 to 0.95 Floris Buelens
[gmx-users] Install gromacs333 with plumed110 Giovanni Bussi
[gmx-users] g_vanhove output Marcelo Carignano
[gmx-users] g_vanhove output Marcelo Carignano
[gmx-users] Re: topolbuild1_2_1.tgz decompressing problem Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: itp file Vitaly V. Chaban
[gmx-users] Re: A bug for MPI of GROMACS? Vitaly V. Chaban
[gmx-users] Re: xdrfile library, read co-ordinates from .xtc Vitaly V. Chaban
[gmx-users] Fwd: xdrfile library, read co-ordinates from .xtc Vitaly V. Chaban
[gmx-users] Re: [gmx-developers] Fwd: xdrfile library, read co-ordinates from .xtc Vitaly V. Chaban
[gmx-users] Re: solvation Vitaly V. Chaban
[gmx-users] Re: solvation Vitaly V. Chaban
[gmx-users] Re: solvation Vitaly V. Chaban
[gmx-users] Re: solvation Vitaly V. Chaban
[gmx-users] Re: help needed for using xdr library Vitaly V. Chaban
[gmx-users] gmx-list digest Vitaly V. Chaban
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 138 Vitaly V. Chaban
[gmx-users] Re: water simulation Vitaly V. Chaban
[gmx-users] Re: wierd behavior of mdrun Vitaly V. Chaban
[gmx-users] Re: wierd behavior of mdrun Vitaly V. Chaban
[gmx-users] Re: SIMULATION OF GOLD NANOPARTICLE Vitaly V. Chaban
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 200 Vitaly V. Chaban
[gmx-users] error in residue topology Chanchal
[gmx-users] error in residue topology Chanchal
[gmx-users] error while executing grompp Chanchal
[gmx-users] error while executing grompp Chanchal
[gmx-users] error while executing grompp Chanchal
[gmx-users] error while executing grompp Chanchal
[gmx-users] FF 43a1 - Residue Name / Editor Prob? Marc Charendoff
[gmx-users] Both atom and residue type four letters . . . Marc Charendoff
[gmx-users] Strange MPI problems. . . Marc Charendoff
[gmx-users] Hydroxide Attempt Marc Charendoff
[gmx-users] Control Atoms for Hydroxide ? Marc Charendoff
[gmx-users] Protein Domain Motion Carla Chiodi
[gmx-users] Re: Infiniband Setup Benchmark Results Ilya Chorny
[gmx-users] Suggestions for 3D-monitor/glasses for visualizing GROMACS output Dean Cuebas
[gmx-users] pull code problem Jian Dai
[gmx-users] how to debug a single executable file using Xcode Shuangxing Dai
[gmx-users] use Xcode to debug Gromacs Shuangxing Dai
[gmx-users] use Xcode to debug Gromacs Shuangxing Dai
[gmx-users] Something about getting started DreamCatcher
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 156 DreamCatcher
[gmx-users] clustering dynamical structures Dmitri Dubov
[gmx-users] clustering dynamical structures Dmitri Dubov
[gmx-users] CG to Atomistic Edson Fauth Vargas Filho
[gmx-users] RE: CG to atomist Edson Fauth Vargas Filho
[gmx-users] GROMACS to AMBER Edson Fauth Vargas Filho
[gmx-users] copper cluster bond to histidines Ran Friedman
[gmx-users] question about modifying the force field Cenfeng Fu
[gmx-users] Designating an output directory Warren Gallin
[gmx-users] Unexpected Production of .pdb files Warren Gallin
[gmx-users] Pressure swings during preliminary runs Warren Gallin
[gmx-users] Pressure swings during preliminary runs Warren Gallin
[gmx-users] Exploding poly-serine Warren Gallin
[gmx-users] Exploding poly-serine Warren Gallin
[gmx-users] pdb2gmx problem Warren Gallin
[gmx-users] gmxtest failures OK? Warren Gallin
[gmx-users] gmxtest failures OK? Warren Gallin
[gmx-users] optimization of gromacs 4.0.5 on AIX Power6 Silvia Giuliani
[gmx-users] Check out my photos on Facebook Dmitriy Golubovsky
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 17 Gerrit Groenhof
[gmx-users] Converting pdb to Amber (to use with ffamber99) Nehme El Hachem
[gmx-users] GROMACS parameterization Berk Hess
[gmx-users] FudgeLJ Berk Hess
[gmx-users] g_vanhove output Berk Hess
[gmx-users] g_vanhove output Berk Hess
[gmx-users] Re: pulling Berk Hess
[gmx-users] pull code problem Berk Hess
[gmx-users] Re: Free Energy Calculation Berk Hess
[gmx-users] question about mdrun -append Berk Hess
[gmx-users] question about mdrun -append Berk Hess
[gmx-users] System instability with switched cut-off Berk Hess
[gmx-users] RE: System instability with switched cut-off Berk Hess
[gmx-users] question about mdrun -append Berk Hess
[gmx-users] Re: Free Energy Calculation Berk Hess
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Berk Hess
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Berk Hess
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Berk Hess
[gmx-users] many charges within one atom Berk Hess
[gmx-users] Speeding things up Berk Hess
[gmx-users] Re: Pull to separate dimer Berk Hess
[gmx-users] p-lincs use Berk Hess
[gmx-users] RE: Re: Pull to separate dimer Berk Hess
[gmx-users] results of tpi Berk Hess
[gmx-users] table extension Berk Hess
[gmx-users] PULL CODE AND NpT ensemble Berk Hess
[gmx-users] PULL CODE AND NpT ensemble Berk Hess
[gmx-users] Pressure for froozen atoms Berk Hess
[gmx-users] Pressure for froozen atoms Berk Hess
[gmx-users] table extension Berk Hess
[gmx-users] Re: g_energy and g_analyze give different averages Berk Hess
[gmx-users] continuation Berk Hess
[gmx-users] RE: Re: g_energy and g_analyze give different averages Berk Hess
[gmx-users] continuation Berk Hess
[gmx-users] 1-4 interaction at distance larger than 1 Yi Hou
[gmx-users] 1-4 interaction at distance larger than 1 Yi Hou
[gmx-users] help needed for using xdr library Kun Huang
[gmx-users] Re: help needed for using xdr library Kun Huang
[gmx-users] Thanks for instruction on using xdr library Kun Huang
[gmx-users] many charges within one atom Rolf Erwin Isele-Holder
[gmx-users] results of tpi Rolf Erwin Isele-Holder
[gmx-users] PMF using umbrella sampling Bob Johnson
[gmx-users] Using Myrinet, openmpi 1.3.3 and GROMACS 3.3.2 Itamar Kass
[gmx-users] grompp crashes when submitted to the cluster Itamar Kass
[gmx-users] grompp crashes when submitted to the cluster Itamar Kass
[gmx-users] grompp results in Segmentation fault Itamar Kass
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] minimization Morteza Khabiri
[gmx-users] Segmentation Fault (Address not mapped) Darrell Koskinen
[gmx-users] Segmentation Fault (Address not mapped) Darrell Koskinen
[gmx-users] Assigning Improper Dihedrals to an Index Group Darrell Koskinen
[gmx-users] Improper Dihedrals Darrell Koskinen
[gmx-users] Determining the energy of an individual atom. Darrell Koskinen
[gmx-users] Determining the energy of an individual atom Darrell Koskinen
[gmx-users] Determining the energy of an individual atom Darrell Koskinen
[gmx-users] Freezing part of a structure Darrell Koskinen
[gmx-users] Graphene Sheet Rolling up into CNT Darrell Koskinen
[gmx-users] Carbohydrate MD Simulation Jim Kress
[gmx-users] Gromacs in Parallel Jim Kress
[gmx-users] angular COM removal Tomas Kubar
[gmx-users] Visit my Netlog profile Anil Kumar
[gmx-users] FEP problem with lambda perturbation 1 to 0.95 Carsten Kutzner
[gmx-users] Strange MPI problems. . . Carsten Kutzner
[gmx-users] Error: MPI Error Carsten Kutzner
[gmx-users] PME problems Carsten Kutzner
[gmx-users] Pulling in GROMACS 4.0.3 Johnny Lam
[gmx-users] Pulling in GROMACS 4.0.3 Johnny Lam
[gmx-users] Pulling in GROMACS 4.0.3 Johnny Lam
[gmx-users] CG to Atomistic Johnny Lam
[gmx-users] Re: dssp output of CG structure of 1K4C Johnny Lam
[gmx-users] Model(l)ing'09 in Erlangen, Germany: Registration Open Until August 31st Harald Lanig
[gmx-users] deprotonated HIS in AMBER03 force field Yuno Lee
[gmx-users] Deprotonated HIS in AMBER03 force field Yuno Lee
[gmx-users] Fwd: xdrfile library, read co-ordinates from .xtc Jussi Lehtola
[gmx-users] help needed for using xdr library Jussi Lehtola
[gmx-users] help needed for using xdr library Jussi Lehtola
[gmx-users] Carbohydrate MD Simulation Justin A. Lemkul
[gmx-users] GROMACS parameterization Justin A. Lemkul
[gmx-users] parameterization of ligand Justin A. Lemkul
[gmx-users] Carbohydrate MD Simulation Justin A. Lemkul
[gmx-users] g_wham problem Justin A. Lemkul
[gmx-users] analysis of result Justin A. Lemkul
[gmx-users] analysis of result Justin A. Lemkul
[gmx-users] 1-4 interaction at distance larger than 1 Justin A. Lemkul
[gmx-users] 1-4 interaction at distance larger than 1 Justin A. Lemkul
[gmx-users] 1-4 interaction at distance larger than 1 Justin A. Lemkul
[gmx-users] Pulling in GROMACS 4.0.3 Justin A. Lemkul
[gmx-users] MD Simulation Errors for Ethylene Glycol-Water System Justin A. Lemkul
[gmx-users] Max nodes = 256 ? Justin A. Lemkul
[gmx-users] g_order warning message Justin A. Lemkul
[gmx-users] Help Installation Gromac OS/MAC Justin A. Lemkul
[gmx-users] Re: MD Simulation Errors for Ethylene Glycol-Water System Justin A. Lemkul
[gmx-users] Designating an output directory Justin A. Lemkul
[gmx-users] Energy Minimisation Values Justin A. Lemkul
[gmx-users] Energy Minimisation Values Justin A. Lemkul
[gmx-users] deprotonated HIS in AMBER03 force field Justin A. Lemkul
[gmx-users] Energy Minimisation and Equilibration Problems Justin A. Lemkul
[gmx-users] Segmentation Fault (Address not mapped) Justin A. Lemkul
[gmx-users] FF 43a1 - Residue Name / Editor Prob? Justin A. Lemkul
[gmx-users] g_order warning message Justin A. Lemkul
[gmx-users] Energy Minimisation and Equilibration Problems Justin A. Lemkul
[gmx-users] Both atom and residue type four letters . . . Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] Re: Difficulty running test particle insertion calculation Justin A. Lemkul
[gmx-users] Very High Forces During Minimisation Justin A. Lemkul
[gmx-users] Re: Error in PDB2GMX Justin A. Lemkul
[gmx-users] Very High Forces During Minimisation Justin A. Lemkul
[gmx-users] Error in PDB2GMX Justin A. Lemkul
[gmx-users] Error in PDB2GMX Justin A. Lemkul
[gmx-users] Error in PDB2GMX Justin A. Lemkul
[gmx-users] Peptide drifting and non-natural amino acids Justin A. Lemkul
[gmx-users] CG to Atomistic Justin A. Lemkul
[gmx-users] Assigning Improper Dihedrals to an Index Group Justin A. Lemkul
[gmx-users] Re: I need help for gromacs Justin A. Lemkul
[gmx-users] Re: I need help for gromacs Justin A. Lemkul
[gmx-users] Fatal Equilibration Errors Justin A. Lemkul
[gmx-users] itp to pdb or gro Justin A. Lemkul
[gmx-users] Fatal Equilibration Errors Justin A. Lemkul
[gmx-users] itp file Justin A. Lemkul
[gmx-users] itp file Justin A. Lemkul
[gmx-users] Fatal Equilibration Errors Justin A. Lemkul
[gmx-users] What are the random factors in mdrun? Justin A. Lemkul
[gmx-users] Fatal Equilibration Errors Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] GROMACS to AMBER Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] water.pdb file Justin A. Lemkul
[gmx-users] Force Field Charge Parameters Justin A. Lemkul
[gmx-users] water.pdb file Justin A. Lemkul
[gmx-users] Force Field Charge Parameters Justin A. Lemkul
[gmx-users] water.pdb file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] Re: itp file Justin A. Lemkul
[gmx-users] pairing error Justin A. Lemkul
[gmx-users] Improper Dihedrals Justin A. Lemkul
[gmx-users] energy minimization Justin A. Lemkul
[gmx-users] energy minimization Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] Adding a residue Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] Re: DSSP => MainChain+H group ? Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] solvation Justin A. Lemkul
[gmx-users] Protein Domain Motion Justin A. Lemkul
[gmx-users] Protein Domain Motion Justin A. Lemkul
[gmx-users] How to start the Normal Modes Analysis? Justin A. Lemkul
[gmx-users] Re: solvation Justin A. Lemkul
[gmx-users] Re: solvation Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] Adding a residue Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] bad bond in polymer Justin A. Lemkul
[gmx-users] Unexpected Production of .pdb files Justin A. Lemkul
[gmx-users] Position Restrain md Justin A. Lemkul
[gmx-users] Position Restrain md Justin A. Lemkul
[gmx-users] Freezing part of a structure Justin A. Lemkul
[gmx-users] index file and freezegrps Justin A. Lemkul
[gmx-users] Spacing Justin A. Lemkul
[gmx-users] No default Ryckaert-Bell. types error for N-terminus acetylated peptide, opls-aa force field Justin A. Lemkul
[gmx-users] Hydroxide Attempt Justin A. Lemkul
[gmx-users] Invalid command line argument: -np Justin A. Lemkul
[gmx-users] Invalid command line argument: -np Justin A. Lemkul
[gmx-users] shuffle switch Justin A. Lemkul
[gmx-users] dssp output of CG structure of 1K4C Justin A. Lemkul
[gmx-users] dssp output of CG structure of 1K4C Justin A. Lemkul
[gmx-users] Invalid command line argument: -np Justin A. Lemkul
[gmx-users] pdb2gmx -water Justin A. Lemkul
[gmx-users] use particle decomposition: mdrun -pd Justin A. Lemkul
[gmx-users] Re: dssp output of CG structure of 1K4C Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] error in residue topology Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp Justin A. Lemkul
[gmx-users] pbc = xyz with mdrun -pd ? Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] .top file from .gro file Justin A. Lemkul
[gmx-users] Problem with running MD Justin A. Lemkul
[gmx-users] error no default LJ-14 type Justin A. Lemkul
[gmx-users] Problem with running MD Justin A. Lemkul
[gmx-users] A charge group moved too far between two domain decomposition steps Justin A. Lemkul
[gmx-users] Re: Help me about GROMACS Justin A. Lemkul
[gmx-users] Re: please help me on last query Justin A. Lemkul
[gmx-users] A charge group moved too far between two Justin A. Lemkul
[gmx-users] A charge group moved too far between two domain decompostion steps Justin A. Lemkul
[gmx-users] Graphene Sheet Rolling up into CNT Justin A. Lemkul
[gmx-users] Pull to separate dimer Justin A. Lemkul
[gmx-users] Re: pdb2gmx problem Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] Re: Pull to separate dimer Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] Re: Re: Pull to separate dimer Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] Using Myrinet, openmpi 1.3.3 and GROMACS 3.3.2 Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] topology file Justin A. Lemkul
[gmx-users] spc model of water Justin A. Lemkul
[gmx-users] [Fwd: Please solve my problem] Justin A. Lemkul
[gmx-users] Something about getting started Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] correlation function Justin A. Lemkul
[gmx-users] Parameters for membrane stability Justin A. Lemkul
[gmx-users] Re: Something about getting started Justin A. Lemkul
[gmx-users] water simulation Justin A. Lemkul
[gmx-users] water simulation Justin A. Lemkul
[gmx-users] Normal mode analysis Justin A. Lemkul
[gmx-users] Re: Regarding Gromacs problem Justin A. Lemkul
[gmx-users] Grompp error Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] Pressure swings during preliminary runs Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] Pressure swings during preliminary runs Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] pdb2gmx -water-> grompp; grompp error Justin A. Lemkul
[gmx-users] error while executing grompp Justin A. Lemkul
[gmx-users] Re: Mdrun error Justin A. Lemkul
[gmx-users] genion question Justin A. Lemkul
[gmx-users] error while executing grompp Justin A. Lemkul
[gmx-users] make_ndx help Justin A. Lemkul
[gmx-users] genion question Justin A. Lemkul
[gmx-users] error while executing grompp Justin A. Lemkul
[gmx-users] error while executing grompp Justin A. Lemkul
[gmx-users] genion question Justin A. Lemkul
[gmx-users] error while executing grompp Justin A. Lemkul
[gmx-users] molecule ouside water box Justin A. Lemkul
[gmx-users] Converting pdb to Amber (to use with ffamber99) Justin A. Lemkul
[gmx-users] Exploding poly-serine Justin A. Lemkul
[gmx-users] LINCS Justin A. Lemkul
[gmx-users] Using make_ndx Justin A. Lemkul
[gmx-users] LINCS Justin A. Lemkul
[gmx-users] error in ATOM2CG.awk script Justin A. Lemkul
[gmx-users] error in ATOM2CG.awk script Justin A. Lemkul
[gmx-users] double precision Justin A. Lemkul
[gmx-users] 43A1-S3 FF Justin A. Lemkul
[gmx-users] multiple T-Coupling groups Justin A. Lemkul
[gmx-users] question Justin A. Lemkul
[gmx-users] pdb2gmx problem Justin A. Lemkul
[gmx-users] Wiki site Justin A. Lemkul
[gmx-users] Re: wierd behavior of mdrun Justin A. Lemkul
[gmx-users] mdrun segmentation fault Justin A. Lemkul
[gmx-users] gmxtest failures OK? Justin A. Lemkul
[gmx-users] Re: SIMULATION OF GOLD NANOPARTICLE Justin A. Lemkul
[gmx-users] gmxtest failures OK? Justin A. Lemkul
[gmx-users] RE: Re: g_energy and g_analyze give different averages Justin A. Lemkul
[gmx-users] How to neutralize net charge of protein and why Justin A. Lemkul
[gmx-users] GROMACS installation for parallel run Justin A. Lemkul
[gmx-users] How to select Force field Justin A. Lemkul
[gmx-users] Pressure scaling warning Justin A. Lemkul
[gmx-users] pdb2gmx Justin A. Lemkul
[gmx-users] pdb2gmx Justin A. Lemkul
[gmx-users] pdb2gmx Justin A. Lemkul
[gmx-users] pdb2gmx Justin A. Lemkul
[gmx-users] error in Deuterium order analysis Justin A. Lemkul
[gmx-users] About Binary mixture Justin A. Lemkul
[gmx-users] The pull rate of AFM Dechang Li
[gmx-users] Different force field: Gromacs vs Autodock Chih-Ying Lin
[gmx-users] Protein Activity Chih-Ying Lin
[gmx-users] Max notes = 256 ? Chih-Ying Lin
[gmx-users] Max nodes = 256 ? Chih-Ying Lin
[gmx-users] DSSP => MainChain+H group ? Chih-Ying Lin
[gmx-users] Protein Domain Motion Chih-Ying Lin
[gmx-users] Protein Domain Motion Chih-Ying Lin
[gmx-users] How to start the Normal Modes Analysis? Chih-Ying Lin
[gmx-users] Invalid command line argument: -np Chih-Ying Lin
[gmx-users] Invalid command line argument: -np Chih-Ying Lin
[gmx-users] Invalid command line argument: -np Chih-Ying Lin
[gmx-users] use particle decomposition: mdrun -pd Chih-Ying Lin
[gmx-users] pbc = xyz with mdrun -pd ? Chih-Ying Lin
[gmx-users] pbc = xyz with mdrun -pd ? Chih-Ying Lin
[gmx-users] A charge group moved too far between two domain decomposition steps Chih-Ying Lin
[gmx-users] A charge group moved too far between two Chih-Ying Lin
[gmx-users] A charge group moved too far between two domain decompostion steps Chih-Ying Lin
[gmx-users] Gaussian network model (GNM) ? Chih-Ying Lin
[gmx-users] System instability with switched cut-off Matteus Lindgren
[gmx-users] RE: System instability with switched cut-off Matteus Lindgren
[gmx-users] A question regarding single sum virial LuLanyuan
[gmx-users] A question regarding single sum virial LuLanyuan
[gmx-users] A question regarding single sum virial LuLanyuan
[gmx-users] QM/MM tutorial available? Ye MEI
[gmx-users] problem during position restraint simulation Moutusi Manna
[gmx-users] table extension Omer Markovitch
[gmx-users] table extension Omer Markovitch
[gmx-users] table extension Omer Markovitch
[gmx-users] table extension Omer Markovitch
[gmx-users] molecule ouside water box Stefano Meliga
[gmx-users] self assembly of 512 lipid bilayer Adwait Mevada
[gmx-users] Asymmetric potential for 512 dppc bilayer using martini Adwait Mevada
[gmx-users] simple question about umbrella pulling Scott Milner
[gmx-users] Re: Free Energy Calculation David Mobley
[gmx-users] Re: Free Energy Calculation David Mobley
[gmx-users] Re: Free Energy Calculation David Mobley
[gmx-users] FEP problem with lambda perturbation 1 to 0.95 David Mobley
[gmx-users] Re: Free Energy Calculation Nagy, Peter I.
[gmx-users] Fatal Equilibration Errors Nagy, Peter I.
[gmx-users] Carbohydrate MD Simulation Nancy
[gmx-users] Carbohydrate MD Simulation Nancy
[gmx-users] topolbuild1_2_1.tgz decompressing problem Nancy
[gmx-users] Carbohydrate MD Simulation Nancy
[gmx-users] MD Simulation Errors for Ethylene Glycol-Water System Nancy
[gmx-users] Re: MD Simulation Errors for Ethylene Glycol-Water System Nancy
[gmx-users] Energy Minimisation Values Nancy
[gmx-users] Energy Minimisation Values Nancy
[gmx-users] Energy Minimisation and Equilibration Problems Nancy
[gmx-users] Energy Minimisation and Equilibration Problems Nancy
[gmx-users] Energy Minimisation and Equilibration Problems Nancy
[gmx-users] Very High Forces During Minimisation Nancy
[gmx-users] Very High Forces During Minimisation Nancy
[gmx-users] Energy Minimisation and Equilibration Problems Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Force Field Charge Parameters Nancy
[gmx-users] Force Field Charge Parameters Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Fatal Equilibration Errors Nancy
[gmx-users] Spacing P.R.Anand Narayanan
[gmx-users] topolbuild1_2_1.tgz decompressing problem Abu Naser
[gmx-users] g_order warning message Andrei Neamtu
[gmx-users] g_order warning message Andrei Neamtu
[gmx-users] FudgeLJ Andrew Paluch
[gmx-users] Gromacs in Parallel Andrew Paluch
[gmx-users] Buckingham Potential Andrew Paluch
[gmx-users] ewald shift question Harold Park
[gmx-users] Help Installation Gromac OS/MAC Luis Paulo
[gmx-users] CG to Atomistic Lili Peng
[gmx-users] CG to Atomistic Lili Peng
[gmx-users] Re: I need help for gromacs Lili Peng
[gmx-users] Exotic metal species Lili Peng
[gmx-users] Exotic metal species Lili Peng
[gmx-users] Problem with running MD Lili Peng
[gmx-users] Problem with running MD Lili Peng
[gmx-users] Using make_ndx Lili Peng
[gmx-users] Protein Domain Motion XAvier Periole
[gmx-users] error in ATOM2CG.awk script XAvier Periole
[gmx-users] Gromacs in Parallel TJ Piggot
[gmx-users] make_ndx help TJ Piggot
[gmx-users] Re: wierd behavior of mdrun Payman Pirzadeh
[gmx-users] shuffle switch Paymon Pirzadeh
[gmx-users] pdb2gmx -water Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] grompp warning with ion's name Paymon Pirzadeh
[gmx-users] pdb2gmx -water-> grompp; grompp error Paymon Pirzadeh
[gmx-users] genion question Paymon Pirzadeh
[gmx-users] genion question Paymon Pirzadeh
[gmx-users] genion question Paymon Pirzadeh
[gmx-users] genion question Paymon Pirzadeh
[gmx-users] wierd behavior of mdrun Paymon Pirzadeh
[gmx-users] wierd behavior of mdrun Paymon Pirzadeh
[gmx-users] question about mdrun -append Baofu Qiao
[gmx-users] question about mdrun -append Baofu Qiao
[gmx-users] question about mdrun -append Baofu Qiao
[gmx-users] question about mdrun -append Baofu Qiao
[gmx-users] Invalid command line argument: -np Nav Rajput
[gmx-users] Error: MPI Error BSV Ramesh
[gmx-users] Carbohydrate MD Simulation Bruce D. Ray
[gmx-users] Re: MD Simulation Errors for Ethylene Glycol-Water System Bruce D. Ray
[gmx-users] Energy Minimisation Values Bruce D. Ray
[gmx-users] Energy Minimisation and Equilibration Problems Bruce D. Ray
[gmx-users] Energy Minimisation and Equilibration Problems Bruce D. Ray
[gmx-users] Energy Minimisation and Equilibration Problems Bruce D. Ray
[gmx-users] Energy Minimisation and Equilibration Problems Bruce D. Ray
[gmx-users] Fatal Equilibration Errors Bruce D. Ray
[gmx-users] Fatal Equilibration Errors Bruce D. Ray
[gmx-users] Re: Difficulty running test particle insertion calculation Jack Roberts
[gmx-users] GROMACS to AMBER Nicolas SAPAY
[gmx-users] The pull rate of AFM Thomas Schlesier
[gmx-users] itp to pdb or gro Jamie Seyed
[gmx-users] itp file Jamie Seyed
[gmx-users] itp file Jamie Seyed
[gmx-users] itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] Re: itp file Jamie Seyed
[gmx-users] energy minimization Jamie Seyed
[gmx-users] energy minimization Jamie Seyed
[gmx-users] solvation Jamie Seyed
[gmx-users] solvation Jamie Seyed
[gmx-users] Re: solvation Jamie Seyed
[gmx-users] solvation Jamie Seyed
[gmx-users] Re: solvation Jamie Seyed
[gmx-users] solvation Jamie Seyed
[gmx-users] solvation Jamie Seyed
[gmx-users] Re: solvation Jamie Seyed
[gmx-users] Re: solvation Jamie Seyed
[gmx-users] Re: solvation Jamie Seyed
[gmx-users] Position Restrain md Jamie Seyed
[gmx-users] Position Restrain md Jamie Seyed
[gmx-users] Position Restrain md Jamie Seyed
[gmx-users] Position Restrain md Jamie Seyed
[gmx-users] index file and freezegrps Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] correlation function Jamie Seyed
[gmx-users] Adding a residue Smith, Chanel Chonda
[gmx-users] Adding a residue Smith, Chanel Chonda
[gmx-users] mpirun.gromacs errors Ricardo O. S. Soares
[gmx-users] What are the random factors in mdrun? Lee Soin
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Lee Soin
[gmx-users] About exclusion of non-bonded interaction for pairs of energy groups Lee Soin
[gmx-users] Max notes = 256 ? David van der Spoel
[gmx-users] mpirun.gromacs errors David van der Spoel
[gmx-users] question about modifying the force field David van der Spoel
[gmx-users] Determining the energy of an individual atom. David van der Spoel
[gmx-users] Exotic metal species David van der Spoel
[gmx-users] Exotic metal species David van der Spoel
[gmx-users] index file and freezegrps David van der Spoel
[gmx-users] topolbuild1_2_1.tgz decompressing problem David van der Spoel
[gmx-users] For free energy landscape! David van der Spoel
[gmx-users] [Fwd: Please solve my problem] David van der Spoel
[gmx-users] g_cluster and g_clustsize confusion David van der Spoel
[gmx-users] Exploding poly-serine David van der Spoel
[gmx-users] is the D G sol of g_sas useless? why? David van der Spoel
[gmx-users] g_energy and g_analyze give different averages David van der Spoel
[gmx-users] Wiki site David van der Spoel
[gmx-users] grompp results in Segmentation fault David van der Spoel
[gmx-users] Speeding things up Borys Szefczyk
[gmx-users] Speeding things up Borys Szefczyk
[gmx-users] Pressure scaling warning Thamu
[gmx-users] xdrfile library, read co-ordinates from .xtc Lipi Thukral
[gmx-users] Re: SIMULATION OF GOLD NANOPARTICLE George Tsigaridas
[gmx-users] Re: SIMULATION OF GOLD NANOPARTICLE George Tsigaridas
[gmx-users] GROMACS installation for parallel run George Tsigaridas
[gmx-users] SIMULATION OF GOLD NANOPARTICLES Γεώργιος Tσιγαρίδας
[gmx-users] SIMULATION OF GOLD NANOPARTICLES Γεώργιος Tσιγαρίδας
[gmx-users] Gromacs 3.3.1 with acpypi Lucio Ricardo Montero Valenzuela
[gmx-users] Grompp error "Cíntia C. Vequi-Suplicy"
[gmx-users] Mdrun error "Cíntia C. Vequi-Suplicy"
[gmx-users] is the D G sol of g_sas useless? why? Felipe Villanelo
[gmx-users] is the D G sol of g_sas useless? why? Felipe Villanelo
[gmx-users] Segmentation Fault (Address not mapped) Dallas B. Warren
[gmx-users] Segmentation Fault (Address not mapped) Dallas B. Warren
[gmx-users] Energy Minimisation and Equilibration Problems Dallas B. Warren
[gmx-users] Suggestions for 3D-monitor/glasses for visualizing GROMACS output Dallas B. Warren
[gmx-users] Energy Minimisation and Equilibration Problems Dallas B. Warren
[gmx-users] Fatal Equilibration Errors Dallas B. Warren
[gmx-users] wierd behavior of mdrun Dallas B. Warren
[gmx-users] Fwd: help-how to define a new residue in gromacs ? Tsjerk Wassenaar
[gmx-users] Protein Activity Tsjerk Wassenaar
[gmx-users] Fwd: Error in PDB2GMX Tsjerk Wassenaar
[gmx-users] Supercomputing Center Tsjerk Wassenaar
[gmx-users] energy minimization Tsjerk Wassenaar
[gmx-users] Improper Dihedrals Tsjerk Wassenaar
[gmx-users] copper cluster bond to histidines Tsjerk Wassenaar
[gmx-users] A question regarding single sum virial Tsjerk Wassenaar
[gmx-users] minimization Tsjerk Wassenaar
[gmx-users] minimization Tsjerk Wassenaar
[gmx-users] minimization Tsjerk Wassenaar
[gmx-users] Re: solvation Tsjerk Wassenaar
[gmx-users] Re: solvation Tsjerk Wassenaar
[gmx-users] How to start the Normal Modes Analysis? Tsjerk Wassenaar
[gmx-users] Control Atoms for Hydroxide ? Tsjerk Wassenaar
[gmx-users] cluster graph Tsjerk Wassenaar
[gmx-users] grompp.mdp Tsjerk Wassenaar
[gmx-users] LINCS Tsjerk Wassenaar
[gmx-users] How to select Force field Tsjerk Wassenaar
[gmx-users] Current status of CMAP Jakob Wohlert
[gmx-users] Current status of CMAP Jakob Wohlert
[gmx-users] Test Particle Insertion Problem-Gromacs 4.0.3 YH
[gmx-users] p-lincs use YH
[gmx-users] Pressure for froozen atoms Yelash, Dr. Leonid
[gmx-users] Difficulty running test particle insertion calculation aeBie8zo aeBie8zo
[gmx-users] question delara aghaie
[gmx-users] question delara aghaie
[gmx-users] Re: pulling aherz
[gmx-users] still pull probs aherz
[gmx-users] pulling aherz
[gmx-users] Pressure for froozen atoms aherz
[gmx-users] continuation aherz
[gmx-users] continuation aherz
[gmx-users] gro file format /pulling aherz
[gmx-users] DNA problem mojdeh akhavan
[gmx-users] PULL CODE AND NpT ensemble gigitang5 at aol.fr
[gmx-users] PULL CODE AND NpT ensemble gigitang5 at aol.fr
[gmx-users] QMMM settings ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 17 ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] error no default LJ-14 type akalabya bissoyi
[gmx-users] For free energy landscape! dxli75
[gmx-users] optimization of gromacs 4.0.5 on AIX Power6 Rodrigo faccioli
[gmx-users] Carbohydrate MD Simulation fufengliu
[gmx-users] pairing error sahajmohit at gmail.com
[gmx-users] No default Ryckaert-Bell. types error for N-terminus acetylated peptide, opls-aa force field maria goranovic
[gmx-users] N-terminal and C-terminal capping in MARTINI maria goranovic
[gmx-users] Are there some free program for running average and block average? maria goranovic
[gmx-users] 1-4 interaction at distance larger than 1 houyi
[gmx-users] preferred/best force fields iulek at interponta.com.br
[Fwd: [gmx-users] preferred/best force fields] iulek at interponta.com.br
[Fwd: [gmx-users] preferred/best force fields] iulek at interponta.com.br
[gmx-users] parts of protein unfolds during MD simulations jayant james
[gmx-users] protein-dna interaction leila karami
[gmx-users] pdb2gmx leila karami
[gmx-users] pdb2gmx leila karami
[gmx-users] pdb2gmx leila karami
[gmx-users] pdb2gmx leila karami
[gmx-users] topology file abhijit kayal
[gmx-users] spc model of water abhijit kayal
[gmx-users] water simulation abhijit kayal
[gmx-users] water simulation abhijit kayal
[gmx-users] Normal mode analysis abhijit kayal
[gmx-users] grompp.mdp abhijit kayal
[gmx-users] double precision abhijit kayal
[gmx-users] pairing error mohit kumar
[gmx-users] pairing error mohit kumar
[gmx-users] pairing error mohit kumar
[gmx-users] pairing error mohit kumar
[gmx-users] pairing error mohit kumar
[gmx-users] query about simulation of a protein containg a metal ion sangeeta kundu
[gmx-users] 43A1-S3 FF lammps lammps
[gmx-users] g_cluster and g_clustsize confusion edmund lee
[gmx-users] g_wham problem accomp lin
[gmx-users] g_wham problem accomp lin
[gmx-users] topology info for specific bond between atoms in different molecules ucsd mail
[gmx-users] Core i7 vs Core2Quad marcos
[gmx-users] Error in PDB2GMX sunny mishra
[gmx-users] Error in PDB2GMX sunny mishra
[gmx-users] Error in PDB2GMX sunny mishra
[gmx-users] water.pdb file sunny mishra
[gmx-users] water.pdb file sunny mishra
[gmx-users] water.pdb file sunny mishra
[gmx-users] dssp output of CG structure of 1K4C sunny mishra
[gmx-users] dssp output of CG structure of 1K4C sunny mishra
[gmx-users] dssp output of CG structure of 1K4C sunny mishra
[gmx-users] Re: dssp output of CG structure of 1K4C sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] .top file from .gro file sunny mishra
[gmx-users] error in ATOM2CG.awk script sunny mishra
[gmx-users] error in ATOM2CG.awk script sunny mishra
[gmx-users] mdrun segmentation fault sunny mishra
[gmx-users] make_ndx help parthiban at ncbs.res.in
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] bad bond in polymer nicegromacs
[gmx-users] cluster graph noob noob
[gmx-users] Testset b95203004 at ntu.edu.tw
[gmx-users] Help with Testset b95203004 at ntu.edu.tw
[gmx-users] Install gromacs333 with plumed110 osmair oliveira
[gmx-users] How to neutralize net charge of protein and why rituraj purohit
[gmx-users] How to select Force field rituraj purohit
[gmx-users] GROMACS parameterization rams rams
[gmx-users] problems with rerun rsf
[gmx-users] problems with rerun rsf
[gmx-users] Normal mode analysis simon sangma
[gmx-users] how to create topology file for butane simon sangma
[gmx-users] multiple T-Coupling groups simon sangma
[gmx-users] reg mopac gromacs installation vidhya sankar
[gmx-users] FEP problem with lambda perturbation 1 to 0.95 Ragnarok sdf
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 42 Ragnarok sdf
[gmx-users] Re: Re: FEP problem with lambda perturbation 1 to 0.95 Ragnarok sdf
[gmx-users] Re: Re: FEP problem with lambda perturbation 1 to 0.95 Ragnarok sdf
[gmx-users] Re: Re: FEP problem with lambda perturbation 1 to 0.95 Ragnarok sdf
[gmx-users] PMF for membrane protein dimer Ragnarok sdf
[gmx-users] Pull to separate dimer Ragnarok sdf
[gmx-users] Re: Pull to separate dimer Ragnarok sdf
[gmx-users] Re: gmx-users Digest, Vol 64, Issue 147 Ragnarok sdf
[gmx-users] Re: Re: Pull to separate dimer Ragnarok sdf
[gmx-users] RE: Re: Pull to separate dimer Ragnarok sdf
[gmx-users] Parameters for membrane stability Ragnarok sdf
[gmx-users] g_energy and g_analyze give different averages Ragnarok sdf
[gmx-users] Re: g_energy and g_analyze give different averages Ragnarok sdf
[gmx-users] Re: g_energy and g_analyze give different averages Ragnarok sdf
[gmx-users] RE: Re: g_energy and g_analyze give different averages Ragnarok sdf
[gmx-users] RE: Re: g_energy and g_analyze give different averages Ragnarok sdf
[gmx-users] copper cluster bond to histidines andrea spitaleri
[gmx-users] copper cluster bond to histidines andrea spitaleri
[gmx-users] problem installing gromacs st
[gmx-users] parameterization of ligand subarna thakur
[gmx-users] desciption of ffG43a1bon.itp subarna thakur
[gmx-users] query regarding ffG43a1bon.itp subarna thakur
[gmx-users] LINCS teklebrh at ualberta.ca
[gmx-users] LINCS teklebrh at ualberta.ca
[gmx-users] Problem in Energy minimisation for a rigid body system dbiswal at ucalgary.ca
[gmx-users] Problem in Energy minimisation for a rigid body system dbiswal at ucalgary.ca
[gmx-users] [Fwd: Please solve my problem] cesteban at unsl.edu.ar
[gmx-users] [Fwd: Please solve my problem] cesteban at unsl.edu.ar
[gmx-users] No default Ryckaert-Bell. types error for N-terminus acetylated peptide, opls-aa force field chris.neale at utoronto.ca
[gmx-users] No default Ryckaert-Bell. types error for N-terminus acetylated peptide, opls-aa force field chris.neale at utoronto.ca
[gmx-users] HEME-cysteine gromacs simulation chris.neale at utoronto.ca
[gmx-users] SIMULATION OF GOLD NANOPARTICLES chris.neale at utoronto.ca
[gmx-users] topolbuild1_2_1.tgz decompressing problem weixin
[gmx-users] A bug for MPI of GROMACS? wuxiao
[gmx-users] Re: A bug for MPI of GROMACS? wuxiao
[gmx-users] Are there some free program for running average and block average? wuxiao
[gmx-users] table problems zhangjianguo2002
[gmx-users] table.xvg problem zhangjianguo2002
[gmx-users] Re:gmx-users Digest, Vol 64, Issue 126 zhangjianguo2002
[gmx-users] table problems zhangjianguo2002
[gmx-users] PME problems 秦光荣
[gmx-users] (no subject) 强赵
[gmx-users] help---How to define new residue in GROMACS? 郭建路
[gmx-users] HELP:Fatal error: There were 1 error(s) processing your input 郭建路
[gmx-users] error:Segmentation fault 郭建路
[gmx-users] HEME-cysteine gromacs simulation 郭建路
[gmx-users] Re: HEME-cysteine gromacs simulation (zimohmily) 郭建路

Last message date: Mon Aug 31 20:17:49 CEST 2009
Archived on: Thu Nov 14 12:07:13 CET 2013

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