[gmx-users] analysis of result

Justin A. Lemkul jalemkul at vt.edu
Mon Aug 3 13:33:20 CEST 2009

Samik Bhattacharya wrote:
> hi i have completed the process of simulating a protein in a lipid 
> environmant... now in the analysis part i have generated some graphical 
> representations of the angle, RMSD etc. but from that i cant conclude 
> about the success of the simulation.....is there any thing (research 
> papers, namely) whcih can provide ideas about how to reach conclusion 
> from the analysed data.....really need some help regarding this matter....

Everyone's conclusions are going to be different based on the question they are 
trying to answer.  The necessary analysis should be derived from this question. 
  Such decisions should be made before running the MD :)


> Thank You
> Shamik
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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