[gmx-users] g_order warning message

Andrei Neamtu neamtuandrei at gmail.com
Wed Aug 5 08:08:03 CEST 2009


Hello,

I am trying to use g_order (gmx 4.0.5) on a coarse grained membrane.
Because the distances between two atoms two bonds apart is greater
than 0.3nm I keep receiving the message:

.....................................
Warming: distance between atoms ***** and XXXXX > 0.3 nm (******) .
Index file might be corrupt
Warming: distance between atoms ***** and XXXXX > 0.3 nm (******) .
Index file might be corrupt
Warming: distance between atoms ***** and XXXXX > 0.3 nm (******) .
Index file might be corrupt
Warming: distance between atoms ***** and XXXXX > 0.3 nm (******) .
Index file might be corrupt
Warming: distance between atoms ***** and XXXXX > 0.3 nm (******) .
Index file might be corrupt
..................... and so on

I think that writing out these messages reduces the performance of the
g_order which takes a lot of time to complete.

Does anyone know how to suppress these messages?

Thank you,
Andrei



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