[gmx-users] minimization

[Mark Abraham]

Morteza Khabiri wrote:
> Dear users
> 
> I want to minimized a dimer protein but at the first step it start to
> explosion. I tried to decrease the dt but it is not working. the protein
> is in the high energy level. Is there any suggestion how to minimized such
> a high energy level protein??

There are suggestions for dealing with broken exploding structures here: 
http://oldwiki.gromacs.org/index.php/blowing_up

Mark