[gmx-users] Designating an output directory

[Justin A. Lemkul]

Warren Gallin wrote:
> Hi,
> 
> Is there any way to set the directory where the output from mdrun will 
> be written if I do not want to have it in the directory from which I am 
> giving the command?
> 

Either specify it explicitly or use an environment variable, i.e.:

mdrun -o ./my/target/directory/traj.trr

or

export MY_DIR=/my/target/directory

mdrun -o $MY_DIR/traj.trr

Of course, the use of export/setenv/etc. will depend on your environment.

-Justin

> Thanks,
> 
> Warren Gallin
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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