[gmx-users] Gromacs in Parallel
Andrew Paluch
apaluch at nd.edu
Mon Aug 10 16:52:41 CEST 2009
To whom this may concern,
I am receiving the following errors when attempting to run Gromacs in
parallel:
Making 1D domain decomposition 4 x 1 x 1
p2_21562: p4_error: Timeout in establishing connection to remote process: 0
p2_21562: (302.964844) net_send: could not write to fd=5, errno = 32
where I am using mpich 1.2.7 for 64 bit processors. From what I can find,
it seems as if this is a mpich issue and not an issue of Gromacs. Has
anyone else encountered such a problem? Also, does anyone have any
suggestions for a solution?
Thank you,
Andrew
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