[gmx-users] bad bond in polymer

[Justin A. Lemkul]

nicegromacs wrote:

>   CAG -CAM

Defining a bond to a previous residue will certainly fail for at least one 
terminus of your polymer chain.  You may find this post useful:

http://oldwww.gromacs.org/pipermail/gmx-users/2009-March/040125.html

If things still aren't working, please post the structure file, as well, and 
identify the bond that is being formed that shouldn't.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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