[gmx-users] bad bond in polymer

Justin A. Lemkul jalemkul at vt.edu
Thu Aug 13 03:50:41 CEST 2009

nicegromacs wrote:

>   CAG -CAM

Defining a bond to a previous residue will certainly fail for at least one 
terminus of your polymer chain.  You may find this post useful:


If things still aren't working, please post the structure file, as well, and 
identify the bond that is being formed that shouldn't.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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