[gmx-users] Protein Domain Motion

[Justin A. Lemkul]

Chih-Ying Lin wrote:
> 
> 
> Hi
> I just check on line that the time scale for the Protein Domain Motion 
> is micro-seconds.
> So, is it possible to simulate the Protein Domain Motion by MD?
> 

Anything is possible, given enough brute computing power.  As for whether or not 
it's feasible, that's up to you.

-Justin

> 
> 
> Thank you
> Lin
> 
> 
> 
> 
> 
> 
> Chih-Ying Lin wrote:
>  >
>  >
>  > Hi
>  > Is it possible to simulate the Protein Domain Motion by MD ?
>  >
> 
> Yes, over long time periods.  Normal Modes Analysis is better suited to this
> kind of thing.
> 
> -Justin
> 
>  >
>  > Thank you
>  > Lin
>  >
>  >
> 
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================