[gmx-users] use particle decomposition: mdrun -pd

[Chih-Ying Lin]

Hi

After the two commands,
grompp_mpi -v -f minim.mdp -c 6LYZ.gro -p 6LYZ.top -o 6LYZ-EM-vacuum.tpr

mpiexec -np 16 mdrun_mpi -v -deffnm 6LYZ-EM-vacuum



Fatal error:
pbc type no is not supported with domain decomposition,
use particle decomposition: mdrun -pd



What does it mean?

Thank you
Lin
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