[gmx-users] Converting pdb to Amber (to use with ffamber99)

Justin A. Lemkul jalemkul at vt.edu
Wed Aug 26 16:29:14 CEST 2009

Nehme El Hachem wrote:
> Hi all,
> I am looking for a simple way to convert amino acid and nucleic residues 
> from the PDB standard to the AMBER Nomenclature (to use with ffamber99 
> in GROMACS).
> Your help is appreciated.

Simple scripting (like Perl) or shell commands (vi, emacs editors or sed).


> Nehme.
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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