[gmx-users] pdb2gmx

[Justin A. Lemkul]

leila karami wrote:
> I am using ffG43a1. in hdb file, there is only amino acids relating to 
> protein and no nucleic acid relating to dna. I post error message in 
> previous mail.
> 

Then the answer is to use a different force field or to create the appropriate 
.hdb entries.  One typically sees the Amber force fields used for protein+DNA 
systems.

-Justin

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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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