[gmx-users] pdb2gmx

Justin A. Lemkul jalemkul at vt.edu
Mon Aug 31 14:39:43 CEST 2009

leila karami wrote:
> I am using ffG43a1. in hdb file, there is only amino acids relating to 
> protein and no nucleic acid relating to dna. I post error message in 
> previous mail.

Then the answer is to use a different force field or to create the appropriate 
.hdb entries.  One typically sees the Amber force fields used for protein+DNA 


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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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