[gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 (memory allocationerror)

Justin A. Lemkul jalemkul at vt.edu
Thu Dec 3 12:54:45 CET 2009

hema dhevi wrote:
> hai justin,
>     ya its robust. and urs is the only tutorial which i found for
>     transmembrane protein MD simulation in GROMACS. Its really useful.
>     thank you.
>     As you said i tried it in other system also there i used gromacs
>     version 3.3.3. i am getting the same kind of error.
>     I didnt use any special configuration flags for installation, for
>     both the versions and in both the
>     systems.
>     And the compiler which i am using is gcc version 4.1.2 20070626 (Red
>     Hat 4.1.2-14)

The gcc-4.1.x series are broken, and have long been known to be the cause of 
several problems reported to this list.  Please upgrade your compiler to a more 
modern one (I believe all newer versions of gcc work fine, per my own usage), 
and re-install Gromacs.


>     Thanks in advance
>     with regards
>     N.Hema Dhevi


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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