December 2009 Archives by date
Starting: Tue Dec 1 07:54:56 CET 2009
Ending: Thu Dec 31 23:07:55 CET 2009
Messages: 679
- [gmx-users] topolbuild
Neha Bharat Gajaria
- [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150
hema dhevi
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
Tsjerk Wassenaar
- [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 memory allocation
hema dhevi
- [gmx-users] Tabulated potentials make newbies crazy
Berk Hess
- [gmx-users] Re: amber force field in Gromacs
servaas
- [gmx-users] Re: amber force field in Gromacs
Erik Marklund
- [gmx-users] Re: amber force field in Gromacs
servaas
- [gmx-users] Segmentation fault when using fourier dihedrals in v. 4.0.5.
Henri Ervasti
- [gmx-users] Segmentation fault when using fourier dihedrals in v. 4.0.5.
Henri Ervasti
- [gmx-users] tabulate interaction functions-improper dihedral
王龙
- [gmx-users] Segmentation fault when using fourier dihedrals in v. 4.0.5.
Teemu Murtola
- [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 (memory allocation error)
Justin A. Lemkul
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
Daniel Parton
- [gmx-users] Re: amber force field in Gromacs
Alan
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
Tsjerk Wassenaar
- [gmx-users] topolbuild
Bruce D. Ray
- [gmx-users] Segmentation fault while using openmpi
pim schravendijk
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
Jörn-Benjamin Lenz
- [gmx-users] amber force field in Gromacs
servaas
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
XAvier Periole
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
Daniel Parton
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
Justin A. Lemkul
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
shayamra at post.tau.ac.il
- [gmx-users] Last step before CG em.mdp
Francesco Pietra
- Fwd: [gmx-users] Last step before CG em.mdp
Francesco Pietra
- [gmx-users] Last step before CG em.mdp
XAvier Periole
- [gmx-users] Last step before CG em.mdp
XAvier Periole
- [gmx-users] Last step before CG em.mdp
Francesco Pietra
- [gmx-users] Last step before CG em.mdp
Justin A. Lemkul
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
chris.neale at utoronto.ca
- [gmx-users] trjconv -pbc cluster with rhombic dodecahedron box
chris.neale at utoronto.ca
- [gmx-users] Re: any chance to write avoid writing out trr but only xtc file ?
Jörn-Benjamin Lenz
- [gmx-users] Re: any chance to write avoid writing out trr but only xtc file ?
Justin A. Lemkul
- SV: [gmx-users] g_saltbr
Sarah Witzke
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
t.peter.Mueller at gmx.net
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
Justin A. Lemkul
- [gmx-users] amber force field in Gromacs
Erik Marklund
- SV: [gmx-users] g_saltbr
Justin A. Lemkul
- [gmx-users] gromp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install
Justin A. Lemkul
- SV: SV: [gmx-users] g_saltbr
Sarah Witzke
- SV: SV: [gmx-users] g_saltbr
Mark Abraham
- [gmx-users] re:re:when using RB dihedral function, how to exclude 1-4 vdw ? (TJ Piggot)
XunJie Yang
- SV: SV: [gmx-users] g_saltbr
Justin A. Lemkul
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
t.peter.Mueller at gmx.net
- [gmx-users] doing averages using g_angle
Amit Choubey
- [gmx-users] For FFamber, should FudgeLJ variable in ffamber.itp be 0.0?
XunJie Yang
- [gmx-users] doing averages using g_angle
Mark Abraham
- [gmx-users] For FFamber, should FudgeLJ variable in ffamber.itp be 0.0?
Mark Abraham
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
Justin A. Lemkul
- [gmx-users] doing averages using g_angle
Amit Choubey
- [gmx-users] doing averages using g_angle
Mark Abraham
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
Shay Amram
- [gmx-users] doing averages using g_angle
Amit Choubey
- [gmx-users] g_mindist , trajectory only CA atoms, to small values?
Tsjerk Wassenaar
- [gmx-users] doing averages using g_angle
Mark Abraham
- [gmx-users] amber force field in Gromacs
servaas
- SV: SV: SV: [gmx-users] g_saltbr
Sarah Witzke
- [gmx-users] PMF calculation using g_wham using different simulation boxes
Li Jianguo
- [gmx-users] Re: amber force field in Gromacs
Alan
- [gmx-users] PMF calculation using g_wham using different simulation boxes
Justin A. Lemkul
- [gmx-users] Re: any chance to write avoid writing out trr but only xtc file ?
Jörn-Benjamin Lenz
- [gmx-users] PMF calculation using g_wham using different simulation boxes
chris.neale at utoronto.ca
- [gmx-users] Re: any chance to write avoid writing out trr but only xtc file ?
XAvier Periole
- [gmx-users] Re: any chance to write avoid writing out trr but only xtc file ?
Justin A. Lemkul
- [gmx-users] Re: amber force field in Gromacs
servaas
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
chris.neale at utoronto.ca
- [gmx-users] .cpt file not used for mdrun input in the absence of the -cpi flag
chris.neale at utoronto.ca
- [gmx-users] Pressure annealing in Gromacs?
Jussi Lehtola
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
Berk Hess
- [gmx-users] any chance to write avoid writing out trr but only xtc file ?
chris.neale at utoronto.ca
- [gmx-users] Pressure annealing in Gromacs?
Mark Abraham
- [gmx-users] Pressure annealing in Gromacs?
chris.neale at utoronto.ca
- [gmx-users] Gromacs 4.0.3 Mopac7 install
Felipe Villanelo
- [gmx-users] Exclusions in topology file seem not working for big systems
Reza Salari
- [gmx-users] For FFamber, should FudgeLJ variable in ffamber.itp be 0.0?
TJ Piggot
- [gmx-users] Exclusions in topology file seem not working for big systems
David van der Spoel
- [gmx-users] Exclusions in topology file seem not working for big systems
Reza Salari
- SV: SV: SV: [gmx-users] g_saltbr
Justin A. Lemkul
- [gmx-users] Pressure annealing in Gromacs?
Jussi Lehtola
- SV: SV: SV: [gmx-users] g_saltbr
Tsjerk Wassenaar
- [gmx-users] doing averages using g_angle
Amit Choubey
- [gmx-users] doing averages using g_angle
Justin A. Lemkul
- [gmx-users] doing averages using g_angle
Amit Choubey
- [gmx-users] doing averages using g_angle
Justin A. Lemkul
- [gmx-users] doing averages using g_angle
Amit Choubey
- SV: SV: SV: SV: [gmx-users] g_saltbr
Sarah Witzke
- SV: SV: SV: SV: [gmx-users] g_saltbr
Sarah Witzke
- [gmx-users] RE: Mark & Justin - grompp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install
Yirdaw, Robel Birru
- [gmx-users] RE: Mark & Justin - grompp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install
Justin A. Lemkul
- SV: SV: SV: [gmx-users] g_saltbr
Tsjerk Wassenaar
- [gmx-users] How to plot Pressure (bar) vs simulation time in ps
Lum Nforbi
- [gmx-users] How to plot Pressure (bar) vs simulation time in ps
Justin A. Lemkul
- [gmx-users] How to plot Pressure (bar) vs simulation time in ps
Mark Abraham
- [gmx-users] Re: PMF calculation using g_wham using different simulation boxes
Li Jianguo
- [gmx-users] PMF calculation using g_wham using different simulation boxes
chris.neale at utoronto.ca
- [gmx-users] program to look at the coordination number
naimah haron naimah
- [gmx-users] program to look at the coordination number
chris.neale at utoronto.ca
- [gmx-users] RE: Mark & Justin - grompp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install
Mark Abraham
- Re: [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 (memory allocationerror)
hema dhevi
- Re: [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 (memory allocationerror)
hema dhevi
- [gmx-users] Pressure annealing in Gromacs?
Jussi Lehtola
- [gmx-users] Exclusions in topology file seem not working for big systems
Berk Hess
- [gmx-users] "coarse_grain.tcl" script does not show all of the coarse-grained bonds in vmd
Ozge Engin
- [gmx-users] "coarse_grain.tcl" script does not show all of the coarse-grained bonds in vmd
Nicolas Sapay
- [gmx-users] spatial distribution function (SDF)
naimah haron naimah
- [gmx-users] Protonation and solvation software
Lucio Ricardo Montero Valenzuela
- [gmx-users] Re: gmx-users Digest, Vol 68, Issue 21
Ozge Engin
- [gmx-users] Re: amber force field in Gromacs
Alan
- [gmx-users] Fatal error: No such moleculetype Na
vivek sharma
- [gmx-users] Fatal error: No such moleculetype Na
Justin A. Lemkul
- [gmx-users] Re:gmx-users Digest, Vol 67, Issue 150 (memory allocationerror)
Justin A. Lemkul
- [gmx-users] Protonation and solvation software
Justin A. Lemkul
- [gmx-users] Reducing Standard Error output
Jack Shultz
- [gmx-users] g_densmap and xpm files
albitauro at virgilio.it
- [gmx-users] PBC screw
Eudes Fileti
- R: [gmx-users] g_densmap and xpm files
albitauro at virgilio.it
- [gmx-users] spatial distribution function (SDF)
chris.neale at utoronto.ca
- [gmx-users] Heat of vaporization in gromacs
Vitaly V. Chaban
- [gmx-users] Heat of vaporization in gromacs
David van der Spoel
- [gmx-users] Reducing Standard Error output
Tsjerk Wassenaar
- [gmx-users] Reducing Standard Error output
Jack Shultz
- [gmx-users] What is the exact difference in the g_energy output between LJ(1-4) LJ(SR) and LJ(LR)?
ms
- [gmx-users] Exclusions in topology file seem not working for big systems
Reza Salari
- [gmx-users] Exclusions in topology file seem not working for big systems
Berk Hess
- [gmx-users] LIE method
Tatiana de Arruda Campos Brasil de Souza
- [gmx-users] Exclusions in topology file seem not working for big systems
Reza Salari
- [gmx-users] topology and rtp file
irene farabella
- [gmx-users] topology and rtp file
Justin A. Lemkul
- [gmx-users] helix tilt
Stefan Hoorman
- [gmx-users] 1-4 interaction energies in g_energy
Vitaly V. Chaban
- [gmx-users] PBC screw
Oliver Stueker
- [gmx-users] looking for polar lipid pdb
Francesco Pietra
- [gmx-users] looking for polar lipid pdb
Justin A. Lemkul
- [gmx-users] Pressure annealing in Gromacs?
Mark Abraham
- [gmx-users] helix tilt
Mark Abraham
- [gmx-users] What is the exact difference in the g_energy output between LJ(1-4) LJ(SR) and LJ(LR)?
Mark Abraham
- [gmx-users] Reducing Standard Error output
Mark Abraham
- [gmx-users] 1-4 interaction energies in g_energy
Mark Abraham
- [gmx-users] Fatal error: No such moleculetype Na
Mark Abraham
- [gmx-users] spatial distribution function (SDF)
Dallas B. Warren
- [gmx-users] What is the exact difference in the g_energy output between LJ(1-4) LJ(SR) and LJ(LR)?
ms
- [gmx-users] Reducing Standard Error output
Jack Shultz
- [gmx-users] What is the exact difference in the g_energy output between LJ(1-4) LJ(SR) and LJ(LR)?
Justin A. Lemkul
- [gmx-users] Radial distribution specifications
Lum Nforbi
- [gmx-users] Radial distribution specifications
Justin A. Lemkul
- [gmx-users] Re: 1-4 interaction energies in g_energy
Vitaly V. Chaban
- [gmx-users] LIE method
Ran Friedman
- [gmx-users] Re: amber force field in Gromacs
servaas
- [gmx-users] Re: 1-4 interaction energies in g_energy
Mark Abraham
- [gmx-users] What is the exact difference in the g_energy output between LJ(1-4) LJ(SR) and LJ(LR)?
ms
- [gmx-users] RF and TI
Alexey Odinokov
- [gmx-users] RF and TI
Berk Hess
- [gmx-users] Exclusions in topology file seem not working for big systems
Berk Hess
- [gmx-users] LIE method
osmair oliveira
- [gmx-users] xmgrace
pawan raghav
- [gmx-users] xmgrace
Justin A. Lemkul
- [gmx-users] Re:Re: helix tilt
Stefan Hoorman
- [gmx-users] Exclusions in topology file seem not working for big systems
Reza Salari
- [gmx-users] g_mindist after trjconv -fit give different results
eladp at post.tau.ac.il
- [gmx-users] dihedral restraints in gromacs 4.0.5
Steven Ari Beasley
- [gmx-users] dihedral restraints in gromacs 4.0.5
Justin A. Lemkul
- [gmx-users] g_mindist after trjconv -fit give different results
Tsjerk Wassenaar
- [gmx-users] amber force field in Gromacs
Lucio Ricardo Montero Valenzuela
- [gmx-users] mpispawn.c:303 Unexpected exit status
shivkumar bale
- [gmx-users] mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] Re:Re: helix tilt
Mark Abraham
- [gmx-users] RE: Mark & Justin - grompp error for gmxtest-4.0.4 and 3.3.3 on new gromacs-4.0.5 install
Yirdaw, Robel Birru
- [gmx-users] gen_vel
leila karami
- [gmx-users] gen_vel
Mark Abraham
- [gmx-users] RF and TI
Alexey Odinokov
- [gmx-users] Problems
pawan raghav
- [gmx-users] Problems
Justin A. Lemkul
- [gmx-users] Re: gmx-users Digest, Vol 68, Issue 35
Stefan Hoorman
- [gmx-users] Reducing Standard Error output
Jack Shultz
- [gmx-users] periodic carbon nanotubes
Andrea Minoia
- [gmx-users] intramolecular LJ and Coulomb interactions
Vitaly V. Chaban
- [gmx-users] intramolecular LJ and Coulomb interactions
Justin A. Lemkul
- [gmx-users] Re: intramolecular LJ and Coulomb interactions
Vitaly V. Chaban
- [gmx-users] Re: intramolecular LJ and Coulomb interactions
Justin A. Lemkul
- [gmx-users] Reducing Standard Error output
Mark Abraham
- [gmx-users] Re: gmx-users Digest, Vol 68, Issue 35
Mark Abraham
- [gmx-users] Questions about hydrogen bond lifetime
Jian Dai
- [gmx-users] Questions about hydrogen bond lifetime
David van der Spoel
- [gmx-users] pdb2gmx error
刘文
- [gmx-users] pdb2gmx error
Justin A. Lemkul
- [gmx-users] DNA coarse grain simulation
Hans HEINDL
- [gmx-users] DNA coarse grain simulation
Justin A. Lemkul
- [gmx-users] Reducing Standard Error output
Jack Shultz
- [gmx-users] Gromacs-4.0.6 released
Erik Lindahl
- [gmx-users] g_mindist after trjconv -fit give different results
eladp at post.tau.ac.il
- [gmx-users] Gromacs-4.0.6 released
Erik Lindahl
- [gmx-users] Fatal error: 1 particles communicated to PME node 1 are more than a cell length out of the do main decomposition cell of their charge group
Nilesh Dhumal
- [gmx-users] Fatal error: 1 particles communicated to PME node 1 are more than a cell length out of the do main decomposition cell of their charge group
Nilesh Dhumal
- [gmx-users] Fatal error: 1 particles communicated to PME node 1 are more than a cell length out of the do main decomposition cell of their charge group
Justin A. Lemkul
- [gmx-users] Grompp failed under double precision
Jack Shultz
- [gmx-users] Grompp failed under double precision
Justin A. Lemkul
- [gmx-users] Reducing Standard Error output
Mark Abraham
- [gmx-users] g_mindist after trjconv -fit give different results
Tsjerk Wassenaar
- [gmx-users] Parallel Installation of gromacs
Mahendran E
- [gmx-users] minimum residue distances
Carla Jamous
- [gmx-users] minimum residue distances
Tsjerk Wassenaar
- [gmx-users] Strange Gromacs4 trajectory visualisation with VMD
Kukol, Andreas
- [gmx-users] Parallel Installation of gromacs
Justin A. Lemkul
- [gmx-users] Strange Gromacs4 trajectory visualisation with VMD
Justin A. Lemkul
- [gmx-users] DNA coarse grain simulation
XAvier Periole
- [gmx-users] Parallel Installation of gromacs
Mark Abraham
- [gmx-users] Strange Gromacs4 trajectory visualisation with VMD
Kukol, Andreas
- [gmx-users] Re: Regarding parallel execution
Justin A. Lemkul
- [gmx-users] Essential dynamics analysis
Austin B. Yongye
- [gmx-users] area per lipid
nittopuran natya
- [gmx-users] area per lipid
Justin A. Lemkul
- [gmx-users] g_helixorient problem
Stefan Hoorman
- [gmx-users] Grompp failed under double precision
Jack Shultz
- [gmx-users] Two Types of van de Waals interactions in one system
hong bingbing
- [gmx-users] 2 questions
Алексей Раевский
- [gmx-users] Re: mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] Two Types of van de Waals interactions in one system
Mark Abraham
- [gmx-users] Grompp failed under double precision
Mark Abraham
- [gmx-users] 2 questions
Mark Abraham
- [gmx-users] g_helixorient problem
Mark Abraham
- [gmx-users] energy conservation with lookup table
Zhe Wu
- [gmx-users] mpispawn.c:303 Unexpected exit status
shivkumar bale
- [gmx-users] gromacs..
Henry Ynag
- [gmx-users] Two Types of van de Waals interactions in one system
XAvier Periole
- [gmx-users] xmgrace plot
Henry Yang
- [gmx-users] xmgrace plot
Jon Fuller
- [gmx-users] xmgrace plot
Henry Yang
- [gmx-users] DNA bending angle
leila karami
- [gmx-users] Re: xmgrace plot
rituraj purohit
- [gmx-users] xmgrace plot
Justin A. Lemkul
- [gmx-users] gromacs..
Justin A. Lemkul
- [gmx-users] mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] DNA bending angle
Justin A. Lemkul
- [gmx-users] g_energy
leila karami
- [gmx-users] g_energy
Justin A. Lemkul
- [gmx-users] functional form of PRODRG dihedrals
Jennifer Williams
- [gmx-users] functional form of PRODRG dihedrals
Justin A. Lemkul
- [gmx-users] Re:Re: g_helixorient problem
stefhoor
- [gmx-users] Two Types of van de Waals interactions in one system
Zhe Wu
- [gmx-users] using trjconv to get a 2x2x2 unit cell for traj.xtc
Jennifer Williams
- [gmx-users] using trjconv to get a 2x2x2 unit cell for traj.xtc
Justin A. Lemkul
- [gmx-users] using trjconv to get a 2x2x2 unit cell for traj.xtc
Ran Friedman
- [gmx-users] using trjconv to get a 2x2x2 unit cell for traj.xtc
Jennifer Williams
- [gmx-users] using trjconv to get a 2x2x2 unit cell for traj.xtc
Justin A. Lemkul
- [gmx-users] Two Types of van de Waals interactions in one system
David van der Spoel
- [gmx-users] Two Types of van de Waals interactions in one system
Zhe Wu
- [gmx-users] Two Types of van de Waals interactions in one system
David van der Spoel
- [gmx-users] Re:Re: g_helixorient problem
Dallas B. Warren
- [gmx-users] Two Types of van de Waals interactions in one system
Zhe Wu
- [gmx-users] Two Types of van de Waals interactions in one system
Mark Abraham
- [gmx-users] g_rms (rmsd vs residue no)
leila karami
- [gmx-users] g_rms (rmsd vs residue no)
Tsjerk Wassenaar
- [gmx-users] rmsd vs residue no
leila karami
- [gmx-users] g_rms (rmsd vs residue no)
João M. Damas
- [gmx-users] g_confrms
leila karami
- [gmx-users] gromacs..
Henry Yang
- Fw: [gmx-users] gromacs..
Henry Yang
- [gmx-users] include file mechanism pope.itp in protein-membrane system
irene farabella
- [gmx-users] How to calculate the PMF?
lammps lammps
- [gmx-users] gromacs..
Justin A. Lemkul
- [gmx-users] include file mechanism pope.itp in protein-membrane system
Justin A. Lemkul
- [gmx-users] How to calculate the PMF?
Justin A. Lemkul
- [gmx-users] gromacs..
XAvier Periole
- [gmx-users] pdb vs xtc with g_bond and g_angle
sandeep somani
- [gmx-users] New to Gromacs -- looking for insights
Simone Pellegrini
- [gmx-users] pdb vs xtc with g_bond and g_angle
Mark Abraham
- [gmx-users] path
Nilesh Dhumal
- [gmx-users] New to Gromacs -- looking for insights
Justin A. Lemkul
- [gmx-users] path
Justin A. Lemkul
- [gmx-users] New to Gromacs -- looking for insights
Mark Abraham
- [gmx-users] g_confrms
Mark Abraham
- [gmx-users] amber ports folder in GROMACS
Andrew Voronkov
- [gmx-users] To continue a run
Lum Nforbi
- [gmx-users] To continue a run
Carsten Kutzner
- [gmx-users] amber ports folder in GROMACS
Justin A. Lemkul
- [gmx-users] combining minimization and md
Jack Shultz
- [gmx-users] combining minimization and md
Justin A. Lemkul
- [gmx-users] Re: Asking for help into crystalline organic Compound Simulations
David van der Spoel
- [gmx-users] RDF plot. This is weird!
Lum Nforbi
- [gmx-users] RDF plot. This is weird!
Justin A. Lemkul
- [gmx-users] How to add NaCl to bulk liquid water
GZ Zhang
- [gmx-users] How to add NaCl to bulk liquid water
Justin A. Lemkul
- [gmx-users] Reproducing Chain Tilt on DPPC gel phase with Martini FF
César Ávila
- [gmx-users] Fwd: RDF plot. This is weird!
Lum Nforbi
- [gmx-users] Fwd: RDF plot. This is weird!
Justin A. Lemkul
- [gmx-users] Re: RDF plot. This is weird!
Lum Nforbi
- [gmx-users] Re: RDF plot. This is weird!
Justin A. Lemkul
- [gmx-users] Problems with calculating Cv and Cp
Lum Nforbi
- [gmx-users] Problems with calculating Cv and Cp
Andrew Paluch
- [gmx-users] fftw vs cmkl
Dallas B. Warren
- [gmx-users] fftw vs cmkl
Mark Abraham
- [gmx-users] Charge neutralization
Arden Perkins
- [gmx-users] Charge neutralization
Mark Abraham
- [gmx-users] energy minimization
subarna thakur
- [gmx-users] gromacs installation on Vista
maryam zargarzadeh
- [gmx-users] gromacs installation on Vista
Mark Abraham
- [gmx-users] energy minimization
Mark Abraham
- [gmx-users] Reproducing Chain Tilt on DPPC gel phase with Martini FF
XAvier Periole
- [gmx-users] energy minimization
subarna thakur
- [gmx-users] how to plot free enenrgy landscape and exact corresponding conformation
xi zhao
- [gmx-users] how to plot free enenrgy landscape and exact corresponding conformation
David van der Spoel
- [gmx-users] energy minimization
Justin A. Lemkul
- [gmx-users] New to Gromacs -- looking for insights
Simone Pellegrini
- [gmx-users] How to increase nodes in mdrun option
Mahendran E
- [gmx-users] How to increase nodes in mdrun option
Justin A. Lemkul
- [gmx-users] How to increase nodes in mdrun option
ms
- [gmx-users] How to increase nodes in mdrun option
Mahendran E
- [gmx-users] How to increase nodes in mdrun option
Justin A. Lemkul
- [gmx-users] How to increase nodes in mdrun option
Carsten Kutzner
- [gmx-users] How to increase nodes in mdrun option
Mark Abraham
- [gmx-users] Reproducing Chain Tilt on DPPC gel phase with Martini FF
César Ávila
- [gmx-users] some questions about umbrella sampling
mircial at sjtu.edu.cn
- [gmx-users] some questions about umbrella sampling
chris.neale at utoronto.ca
- [gmx-users] fftw vs cmkl
Dallas B. Warren
- [gmx-users] g_velacc problem
Ramachandran G
- [gmx-users] mpispawn.c:303 Unexpected exit status
shivkumar bale
- [gmx-users] fftw vs cmkl
Mark Abraham
- [gmx-users] Msd of molecule center of mass (g_msd -mol with -rmcomm)
Matthew Hoopes
- [gmx-users] mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] mpispawn.c:303 Unexpected exit status
shivkumar bale
- [gmx-users] mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] fftw vs cmkl
Dallas B. Warren
- [gmx-users] splitting a trajectory
Ramachandran G
- [gmx-users] splitting a trajectory
Justin A. Lemkul
- [gmx-users] splitting a trajectory
Dallas B. Warren
- [gmx-users] splitting a trajectory
Ramachandran G
- [gmx-users] splitting a trajectory
Justin A. Lemkul
- [gmx-users] splitting a trajectory
Ramachandran G
- [gmx-users] Wrong bond and Lennard-Jones potentials in cyclohexane
Henri Ervasti
- [gmx-users] plot of mutual orienatation
Nilesh Dhumal
- [gmx-users] plot of mutual orienatation
Justin A. Lemkul
- [gmx-users] plot of mutual orienatation
Nilesh Dhumal
- [gmx-users] plot of mutual orienatation
Justin A. Lemkul
- [gmx-users] New to Gromacs -- looking for insights
Mark Abraham
- [gmx-users] Wrong bond and Lennard-Jones potentials in cyclohexane
Mark Abraham
- [gmx-users] Wrong bond and Lennard-Jones potentials in cyclohexane
Carl Caleman
- [gmx-users] simulation with non-zero total charge
seunghwan lee
- [gmx-users] simulation with non-zero total charge
Mark Abraham
- [gmx-users] Strange Gromacs4 trajectory visualisation with VMD
Matthew Hoopes
- [gmx-users] tip5p water model topology
Ramachandran G
- [gmx-users] tip5p water model topology
Justin A. Lemkul
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
chris.neale at utoronto.ca
- [gmx-users] plot of mutual orienatation
Nilesh Dhumal
- [gmx-users] plot of mutual orienatation
Justin A. Lemkul
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
Mark Abraham
- [gmx-users] mpispawn.c:303 Unexpected exit status
shivkumar bale
- [gmx-users] mpispawn.c:303 Unexpected exit status
Justin A. Lemkul
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
chris.neale at utoronto.ca
- [gmx-users] gmx-GRACE problem
pawan raghav
- [gmx-users] gmx-GRACE problem
Justin A. Lemkul
- [gmx-users] plot of mutual orienatation
Nilesh Dhumal
- [gmx-users] plot of mutual orienatation
Justin A. Lemkul
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
Mark Abraham
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
chris.neale at utoronto.ca
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
Mark Abraham
- [gmx-users] where is the gromacs 4.0.6/7 revision list?
Justin A. Lemkul
- [gmx-users] Hi
pawan raghav
- [gmx-users] Hi
Justin A. Lemkul
- [gmx-users] simulation with non-zero total charge
seunghwan lee
- [gmx-users] typo for opls_179 (OS) and opls_180 (OS) in ffoplsaanb.itp
Pradip Biswas
- [gmx-users] 1-4 ineractions in double precision
Jessé Nóbrega
- [gmx-users] 1-4 ineractions in double precision
Justin A. Lemkul
- [gmx-users] 1-4 ineractions in double precision
Justin A. Lemkul
- [gmx-users] GRACE
pawan raghav
- [gmx-users] GRACE
ms
- [gmx-users] GRACE
Mark Abraham
- [gmx-users] simulation with non-zero total charge
Mark Abraham
- [gmx-users] trajectory info
D D
- [gmx-users] trajectory info
Mark Abraham
- [gmx-users] trajectory info
Omer Markovitch
- [gmx-users] trajectory info
D D
- [gmx-users] superimposition
leila karami
- [gmx-users] superimposition
Mark Abraham
- [gmx-users] superimposition
leila karami
- [gmx-users] superimposition
David van der Spoel
- [gmx-users] superimposition
Mark Abraham
- [gmx-users] free energy perturbation
Giovanni Bussi
- [gmx-users] free energy perturbation
Berk Hess
- [gmx-users] free energy perturbation
Giovanni Bussi
- [gmx-users] do_dssp Installation instructions in case you have errors
Kirill Bessonov
- [gmx-users] Can I combine my old and new .trr files?
Nilesh Dhumal
- [gmx-users] Can I combine my old and new .trr files?
XAvier Periole
- [gmx-users] Check for bad contacts and/or reduce the timestep
nishap.patel at utoronto.ca
- [gmx-users] Check for bad contacts and/or reduce the timestep
Justin A. Lemkul
- [gmx-users] Check for bad contacts and/or reduce the timestep
nishap.patel at utoronto.ca
- [gmx-users] Check for bad contacts and/or reduce the timestep
Justin A. Lemkul
- [gmx-users] do_dssp Installation instructions in case you have errors
Mark Abraham
- [gmx-users] Freeze backbone & Pressure scaling more than 1%
이진희
- [gmx-users] freeze backbone & Pressure scaling error
이진희
- [gmx-users] typo in ffoplsaanb.itp for opls_179 (OS) and opls_180 (OS)
Pradip Biswas
- [gmx-users] typo in ffoplsaanb.itp for opls_179 (OS) and opls_180 (OS)
Mark Abraham
- [gmx-users] Freeze backbone & Pressure scaling more than 1%
Mark Abraham
- [gmx-users] Hi
ashish pandey
- [gmx-users] Hi
XAvier Periole
- [gmx-users] g_sdf and visualizing using gOpenMol
Jennifer Williams
- [gmx-users] Re: Regarding g_rmsf
rituraj purohit
- [gmx-users] Re: Regarding g_rmsf
Justin A. Lemkul
- [gmx-users] Check for bad contacts and/or reduce the timestep
Thomas Schlesier
- [gmx-users] DPPC to CG DPPC
sunny mishra
- [gmx-users] DPPC to CG DPPC
Justin A. Lemkul
- [gmx-users] DPPC to CG DPPC
XAvier Periole
- [gmx-users] DPPC to CG DPPC
sunny mishra
- [gmx-users] DPPC to CG DPPC
XAvier Periole
- [gmx-users] DPPC to CG DPPC
sunny mishra
- [gmx-users] DPPC to CG DPPC
XAvier Periole
- [gmx-users] DPPC to CG DPPC
sunny mishra
- [gmx-users] DPPC to CG DPPC
XAvier Periole
- [gmx-users] New ion parameters and OPLS-AA
Reza Salari
- [gmx-users] g_sdf and visualizing using gOpenMol
Dallas B. Warren
- [gmx-users] g_sdf and visualizing using gOpenMol
Dallas B. Warren
- [gmx-users] New ion parameters and OPLS-AA
Andrew Paluch
- [gmx-users] g_sdf and visualizing using gOpenMol
Dallas B. Warren
- [gmx-users] New ion parameters and OPLS-AA
Reza Salari
- [gmx-users] New ion parameters and OPLS-AA
eladp at post.tau.ac.il
- [gmx-users] New ion parameters and OPLS-AA
David van der Spoel
- [gmx-users] freeze group
subarna thakur
- [gmx-users] Denaturation of Proteins by MARTINI Coarse-Graining Forse Field
rasoul nasiri
- [gmx-users] Denaturation of Proteins by MARTINI Coarse-Graining Forse Field
XAvier Periole
- [gmx-users] freeze group
Justin A. Lemkul
- [gmx-users] Frequency confout is updated
Jack Shultz
- [gmx-users] Frequency confout is updated
Justin A. Lemkul
- [gmx-users] Frequency confout is updated
Mark Abraham
- [gmx-users] New ion parameters and OPLS-AA
Reza Salari
- [gmx-users] New ion parameters and OPLS-AA
Alexandre Suman de Araujo
- [gmx-users] Frequency confout is updated
Jack Shultz
- [gmx-users] New ion parameters and OPLS-AA
Reza Salari
- [gmx-users] New ion parameters and OPLS-AA
David van der Spoel
- [gmx-users] Check for bad contacts and/or reduce the timestep
nishap.patel at utoronto.ca
- [gmx-users] Check for bad contacts and/or reduce the timestep
Justin A. Lemkul
- [gmx-users] New ion parameters and OPLS-AA
Reza Salari
- [gmx-users] Check for bad contacts and/or reduce the timestep
nishap.patel at utoronto.ca
- [gmx-users] Check for bad contacts and/or reduce the timestep
Justin A. Lemkul
- [gmx-users] Check for bad contacts and/or reduce the timestep
nishap.patel at utoronto.ca
- [gmx-users] RDF methanol and water
nishap.patel at utoronto.ca
- [gmx-users] RDF methanol and water
Justin A. Lemkul
- [gmx-users] Check for bad contacts and/or reduce the timestep
chris.neale at utoronto.ca
- [gmx-users] Frequency confout is updated
Mark Abraham
- [gmx-users] Frequency confout is updated
chris.neale at utoronto.ca
- [gmx-users] sulfate atomtype for ffgmx
Niesen, Michiel
- [gmx-users] sulfate atomtype for ffgmx
Justin A. Lemkul
- [gmx-users] sulfate atomtype for ffgmx
Mark Abraham
- [gmx-users] typo in ffoplsaanb.itp for opls_179 (OS) and opls_180 (OS)
Pradip Biswas
- [gmx-users] Problem with Gromacs-CPMD
Pradip Biswas
- [gmx-users] [Fwd: installing gromacs on vista]
Mark Abraham
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] How can I reconstruct the system in CGMD simulation?
Mark Abraham
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] How can I reconstruct the system in CGMD simulation?
César Ávila
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] the resource of Vdw Radii in Vdwradii.dat
huikuan chao
- [gmx-users] How can I reconstruct the system in CGMD simulation?
Justin A. Lemkul
- [gmx-users] the resource of Vdw Radii in Vdwradii.dat
David van der Spoel
- [gmx-users] How is calculated the bind free energy GROMACS???
deisy yurley rodriguez sarmiento
- [gmx-users] Re: gmx-users Digest, Vol 68, Issue 86
Alan Chen
- [gmx-users] Re: sulfate atomtype for ffgmx (Justin A. Lemkul)
Niesen, Michiel
- [gmx-users] error with changing pdb file
ksm tprk
- [gmx-users] Re: sulfate atomtype for ffgmx (Justin A. Lemkul)
Justin A. Lemkul
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] LIE precision and accuracy
Marc Charendoff
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] LIE precision and accuracy
David van der Spoel
- [gmx-users] LIE precision and accuracy
chris.neale at utoronto.ca
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] trjcat error
Anirban Ghosh
- [gmx-users] trjcat error
Tsjerk Wassenaar
- [gmx-users] trjcat error
Anirban Ghosh
- [gmx-users] trjcat error
Mark Abraham
- [gmx-users] trjcat error
Anirban Ghosh
- [gmx-users] trjcat error
Mark Abraham
- [gmx-users] reference for make_edi -linacc
chris.neale at utoronto.ca
- [gmx-users] reference for make_edi -linacc
Ran Friedman
- [gmx-users] pdb2gmx -merge non interactive
Wojtyczka, André
- [gmx-users] reference for make_edi -linacc
chris.neale at utoronto.ca
- [gmx-users] problems with intel I7 (2.67 GHz)
XAvier Periole
- [gmx-users] pdb2gmx -merge non interactive
chris.neale at utoronto.ca
- [gmx-users] reference for make_edi -linacc
Carsten Kutzner
- [gmx-users] pdb2gmx -merge non interactive
Wojtyczka, André
- [gmx-users] pdb2gmx -merge non interactive
chris.neale at utoronto.ca
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] pdb2gmx -merge non interactive
Wojtyczka, André
- [gmx-users] pdb2gmx -merge non interactive
Oliver Stueker
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] How can I reconstruct the system in CGMD simulation?
César Ávila
- [gmx-users] problems with intel I7 (2.67 GHz)
Alexey Shvetsov
- [gmx-users] problems with intel I7 (2.67 GHz)
David van der Spoel
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] How can I reconstruct the system in CGMD simulation?
Justin A. Lemkul
- [gmx-users] problems with intel I7 (2.67 GHz)
Alexey Shvetsov
- [gmx-users] error with changing pdb file
Justin A. Lemkul
- [gmx-users] exclusive list of matching searches on the gmx-users list
chris.neale at utoronto.ca
- [gmx-users] Residue interaction energy
abelius
- [gmx-users] Residue interaction energy
Justin A. Lemkul
- [gmx-users] essential dynamics mdrun with SD integrator yields segmentation fault
chris.neale at utoronto.ca
- [gmx-users] Enc: 1-4 ineractions in double precision
Jessé Nóbrega
- [gmx-users] Residue interaction energy
abelius
- [gmx-users] Enc: 1-4 ineractions in double precision
Justin A. Lemkul
- [gmx-users] Residue interaction energy
Justin A. Lemkul
- [gmx-users] multiple eigenvectors with -linfix and the application of eigenvalues
chris.neale at utoronto.ca
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
xi zhao
- [gmx-users] Principal axis (g_principal)
Sarah Witzke
- [gmx-users] exert of special pH
leila karami
- [gmx-users] exert of special pH
Justin A. Lemkul
- [gmx-users] How to calculate PN vector head group angle...
Henry Yang
- [gmx-users] How to calculate PN vector head group angle...
David van der Spoel
- [gmx-users] [Fwd: Gromacs podcast is out]
David van der Spoel
- [gmx-users] Why density increase with increasing the cutoff length?
Yanmei Song
- [gmx-users] Why density increase with increasing the cutoff length?
David van der Spoel
- [gmx-users] Why density increase with increasing the cutoff length?
XAvier Periole
- [gmx-users] Why density increase with increasing the cutoff length?
David van der Spoel
- [gmx-users] Why density increase with increasing the cutoff length?
XAvier Periole
- [gmx-users] Why density increase with increasing the cutoff length?
Arden Perkins
- [gmx-users] Why density increase with increasing the cutoff length?
Mark Abraham
- [gmx-users] multiple eigenvectors with -linfix and the application of eigenvalues
Carsten Kutzner
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
Tsjerk Wassenaar
- [gmx-users] Why density increase with increasing the cutoff length?
XAvier Periole
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
xi zhao
- [gmx-users] essential dynamics mdrun with SD integrator yields segmentation fault
Carsten Kutzner
- [gmx-users] calculaton of electrostatic potential
Henry Yang
- [gmx-users] multiple eigenvectors with -linfix and the application of eigenvalues
chris.neale at utoronto.ca
- [gmx-users] editconf.
david.lisgarten at canterbury.ac.uk
- [gmx-users] Why density increase with increasing the cutoff length?
Yanmei Song
- [gmx-users] Why density increase with increasing the cutoff length?
David van der Spoel
- [gmx-users] editconf.
Carsten Kutzner
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] How can I reconstruct the system in CGMD simulation?
Justin A. Lemkul
- [gmx-users] How can I reconstruct the system in CGMD simulation?
rasoul nasiri
- [gmx-users] How can I reconstruct the system in CGMD simulation?
Justin A. Lemkul
- [gmx-users] Solvent Accessible Area with different Claculation Groups
Petridis, Loukas
- [gmx-users] editconf.
Mark Abraham
- [gmx-users] Solvent Accessible Area with different Claculation Groups
Justin A. Lemkul
- [gmx-users] Using GENCONF
Lum Nforbi
- [gmx-users] Using GENCONF
Mark Abraham
- [gmx-users] calculaton of electrostatic potential
Mark Abraham
- [gmx-users] Solvent Accessible Area with different Claculation Groups
David van der Spoel
- [gmx-users] superimposed structures
leila karami
- [gmx-users] steered MD simulation for calculating the PMF
lammps lammps
- [gmx-users] superimposed structures
Mark Abraham
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
Tsjerk Wassenaar
- [gmx-users] steered MD simulation for calculating the PMF
Justin A. Lemkul
- [gmx-users] calculation of chemical shift anisotropy
Moutusi Manna
- [gmx-users] superimposed structures
leila karami
- [gmx-users] g_mindist -or inconsistencies with atom-pairs
shayamra at post.tau.ac.il
- [gmx-users] g_mindist -or inconsistencies with atom-pairs
Ran Friedman
- [gmx-users] help
ashish pandey
- [gmx-users] implicit solvent
servaas
- [gmx-users] help
Justin A. Lemkul
- [gmx-users] trjconv -pbc: how to keep all parts of the system "clustered" together in PDB?
Visvaldas K.
- [gmx-users] Solvent Accessible Area with different Claculation Groups
Benjamin Lindner
- [gmx-users] help
David van der Spoel
- [gmx-users] A problem with a "detaching Calpha/s"
Arik Cohen
- [gmx-users] trjconv -pbc: how to keep all parts of the system "clustered" together in PDB?
Mark Abraham
- [gmx-users] A problem with a "detaching Calpha/s"
Mark Abraham
- [gmx-users] superimposed structures
Mark Abraham
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
xi zhao
- [gmx-users] How to put more solutes into the system ?
Chih-Ying Lin
- [gmx-users] How to put more solutes into the system ?
Mark Abraham
- [gmx-users] (no subject)
Mohammad Ghahramanpour
- [gmx-users] difference between rmsd and rmsf
leila karami
- [gmx-users] difference between rmsd and rmsf
XAvier Periole
- [gmx-users] (no subject)
Mark Abraham
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
Tsjerk Wassenaar
- [gmx-users] MSD
afsaneh maleki
- [gmx-users] trjconv -pbc: how to keep all parts of the system "clustered" together in PDB?
Visvaldas K.
- [gmx-users] how to obtain corresponding conformation for each point in the 2-D projection
xi zhao
- [gmx-users] How to put more solutes into the system ?
Chih-Ying Lin
- [gmx-users] Depth of penetration of DMPC lipid bilayer. How?
Kirill Bessonov
- [gmx-users] Protein-ligand
P.R.Anand Narayanan
- [gmx-users] Solvent Accessible Area with different Claculation Groups
Justin A. Lemkul
- [gmx-users] g_mindist -or inconsistencies with atom-pairs
Shay Amram
- [gmx-users] Depth of penetration of DMPC lipid bilayer. How?
Justin A. Lemkul
- [gmx-users] Protein-ligand
Justin A. Lemkul
- [gmx-users] MSD
Justin A. Lemkul
- [gmx-users] make_edi fails with multiple eigenvectors for -linfix and -linacc
chris.neale at utoronto.ca
- [gmx-users] Depth of penetration of DMPC lipid bilayer. How?
chris.neale at utoronto.ca
- [gmx-users] Re: Help with Gromacs
Tsjerk Wassenaar
- [gmx-users] How to put more solutes into the system ?
Mark Abraham
- [gmx-users] Segmentation Fault Problem
Nancy
- [gmx-users] How to put more solutes into the system ?
Chih-Ying Lin
- [gmx-users] metal-oxide
jmahalik at polysci.umass.edu
- [gmx-users] metal-oxide
Mark Abraham
- [gmx-users] make_edi fails with multiple eigenvectors for -linfix and -linacc
Carsten Kutzner
- [gmx-users] Depth of penetration of DMPC lipid bilayer. How?
Pavan Ghatty
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [gmx-users] Turn off the electrostatic interaction between two particular groups
Li Jianguo
- [gmx-users] Turn off the electrostatic interaction between two particular groups
Mark Abraham
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Mark Abraham
- [gmx-users] fix a group in truncated octahedron
lammps lammps
- [gmx-users] Re: multiple protein in a simulation box
Justin A. Lemkul
- [gmx-users] Replica Exchange MD on more than 64 processors
bharat v. adkar
- [gmx-users] Replica Exchange MD on more than 64 processors
Mark Abraham
- [gmx-users] Fatal Error: Segmentation Fault
Nancy
- [gmx-users] Fatal Error: Segmentation Fault
Justin A. Lemkul
- [gmx-users] tpr older version message
Jack Shultz
- [gmx-users] tpr older version message
Mark Abraham
- [gmx-users] Replica Exchange MD on more than 64 processors
bharat v. adkar
- [gmx-users] Replica Exchange MD on more than 64 processors
Mark Abraham
- [gmx-users] tpr older version message
Jack Shultz
- [gmx-users] Replica Exchange MD on more than 64 processors
bharat v. adkar
- [gmx-users] fix a group in truncated octahedron
lammps lammps
- [gmx-users] fix a group in truncated octahedron
chris.neale at utoronto.ca
- [gmx-users] Decoupling of Coul. and LJ separately in free energy calculation
Eudes Fileti
- [gmx-users] Replica Exchange MD on more than 64 processors
Mark Abraham
- [gmx-users] tpr older version message
Mark Abraham
- [gmx-users] tpr older version message
Jack Shultz
- [gmx-users] tpr older version message
Justin A. Lemkul
- [gmx-users] convert B-factor
AntonioLeung
- [gmx-users] convert B-factor
Mark Abraham
- [gmx-users] Replica Exchange MD on more than 64 processors
bharat v. adkar
- [gmx-users] protein simulation
edmund lee
- [gmx-users] convert B-factor
AntonioLeung
- [gmx-users] Replica Exchange MD on more than 64 processors
David van der Spoel
- [gmx-users] Replica Exchange MD on more than 64 processors
bharat v. adkar
- [gmx-users] convert B-factor
Tsjerk Wassenaar
- [gmx-users] protein simulation
Mark Abraham
- [gmx-users] Replica Exchange MD on more than 64 processors
Mark Abraham
- [gmx-users] conversion between harmonic bonds/angles and GROMOS96 bonds/angles
Michael Feig
- [gmx-users] trjconv -pbc: how to keep all parts of the system "clustered" together in PDB?
Visvaldas K.
- [gmx-users] Problems with umbrella sampling
Amir Marcovitz
- [gmx-users] Problems with umbrella sampling
Justin A. Lemkul
- [gmx-users] trjconv -pbc: how to keep all parts of the system "clustered" together in PDB?
chris.neale at utoronto.ca
- [gmx-users] the code speed between Gromacs 3.0 and Gromacs 4.0
Dechang Li
- [gmx-users] the code speed between Gromacs 3.0 and Gromacs 4.0
Justin A. Lemkul
- [gmx-users] fix a group in truncated octahedron
lammps lammps
- [gmx-users] fix a group in truncated octahedron
Tsjerk Wassenaar
- [gmx-users] linc warnings
subarna thakur
- [gmx-users] Problems with umbrella sampling
Amir Marcovitz
- [gmx-users] Problems with umbrella sampling
Justin A. Lemkul
- [gmx-users] linc warnings
Justin A. Lemkul
- [gmx-users] mpi code in the gromacs utilities
Vitaly V. Chaban
- [gmx-users] mpi code in the gromacs utilities
Justin A. Lemkul
- [gmx-users] fix a group in truncated octahedron
chris.neale at utoronto.ca
- [gmx-users] linc warnings
subarna thakur
- [gmx-users] linc warnings
Justin A. Lemkul
- [gmx-users] linc warnings
Justin A. Lemkul
- [gmx-users] some molecule clashing with another ?
Chih-Ying Lin
- [gmx-users] some molecule clashing with another ?
Justin A. Lemkul
- [gmx-users] some molecule clashing with another ?
Chih-Ying Lin
- [gmx-users] some molecule clashing with another ?
Justin A. Lemkul
- [gmx-users] How to modify or avoid some molecule clashing with another ?
Chih-Ying Lin
- [gmx-users] How to modify or avoid some molecule clashing with another ?
Justin A. Lemkul
- [gmx-users] some molecule clashing with another ?
Chih-Ying Lin
- [gmx-users] some molecule clashing with another ?
Mark Abraham
- [gmx-users] LINCS WARNING max 597108032.000000 (between atoms 366 and 368) ?
Chih-Ying Lin
- [gmx-users] LINCS WARNING max 597108032.000000 (between atoms 366 and 368) ?
Justin A. Lemkul
- [gmx-users] LINCS WARNING max 597108032.000000 (between atoms 366 and 368) ?
Mark Abraham
- [gmx-users] clashing happened inside the protein molecule?
Chih-Ying Lin
- [gmx-users] Break ? => Position restrained MD
Chih-Ying Lin
- [gmx-users] Break ? => Position restrained MD
Mark Abraham
- [gmx-users] gromacs 4.06 binary for linux -redhat
venkat
- [gmx-users] gromacs 4.06 binary for linux -redhat
Justin A. Lemkul
- [gmx-users] fix a group in truncated octahedron
lammps lammps
- [gmx-users] PME node
Vitaly V. Chaban
- [gmx-users] fix a group in truncated octahedron
Mark Abraham
- [gmx-users] LINCS WARNING max 597108032.000000 (between atoms 366 and 368) ?
Tsjerk Wassenaar
- [gmx-users] PME node
Justin A. Lemkul
- [gmx-users] grompp segmentation error
ram bio
- [gmx-users] gromacs 4.06 binary for linux -redhat
venkat
- [gmx-users] gromacs 4.06 binary for linux -redhat
Jussi Lehtola
- [gmx-users] gromacs 4.06 binary for linux -redhat
venkat
- [gmx-users] using mdrun in the supercomputer
Asmaa Elsheshiny
- [gmx-users] grompp segmentation error
Justin A. Lemkul
- [gmx-users] using mdrun in the supercomputer
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [gmx-users] pdb file for ammonia
nishap.patel at utoronto.ca
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [gmx-users] pdb file for ammonia
Abu Naser
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [gmx-users] pdb file for ammonia
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [gmx-users] pdb file for ammonia
chris.neale at utoronto.ca
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Justin A. Lemkul
- [Fwd: Re: [gmx-users] A problem with a "detaching Calpha/s"]
Arik Cohen
Last message date:
Thu Dec 31 23:07:55 CET 2009
Archived on: Thu Nov 14 12:07:56 CET 2013
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