[gmx-users] area per lipid

nittopuran natya nittopuran at gmail.com
Mon Dec 7 17:30:35 CET 2009

Dear gromacs users,

I am trying to calculate and generate the xvg output of area per lipid for
drug molecules inserted into the DMPC 128 lipid bilayer. I have run the
simulation for 200 ns. First 100 ns were discarded as equilibration. The
next 100 ns I will use for determining area per lipid. I have short
tarjectory file .trr and .xtc (20 ns of each). Could someone pls tell me how
can i generate a xvg plot for area per lipid as a function of time evolution
with using these 20 ns short trajectory over the last 100 ns in one xvg plot
. Which gromacs utility I have to use? And also how to calculate the area
per lipid.

Thanks in advance

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