[gmx-users] g_confrms

[leila karami]

Hi

I used command : [g_confrms -f1 initial.gro  -f2 final.gro -n1 1.ndx -n2
2.ndx -o fit.pdb]   to obtain superimposed structure of initial and final
structures. I saw fit.pdb file by vmd but fit.pdb obtained was very
mixed,busy and unclear.

is my manner true? is there other method for this purpose?

Any help will highly appreciated!
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