[gmx-users] splitting a trajectory

Ramachandran G gtrama at gmail.com
Fri Dec 11 10:51:24 CET 2009


Thanks, it works when i give proper time.

Previously i made mistake by giving the time frame number.
Rama

On Thu, Dec 10, 2009 at 9:13 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> Ramachandran G wrote:
>
>> Thanks for your help.
>> I have tried the command
>>
>> trjconv -f  traj.trr -s AFP-500ps.tpr -b 87001 -e 99000  -o test.gro
>>
>> but nothing was written on output file(test.gro) and got the message
>>
>> "WARNING no output, trajectory ended at 500"
>>
>> Am i doing it right?
>>
>>
> Obviously not.  If your trajectory ended at 500 ps, then frames at 87001
> and 99000 ps clearly don't exist.
>
> -Justin
>
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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-- 
Postdoctoral Research Scholar,
Department of Chemistry,
University of Nevada, Reno.
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