[gmx-users] tip5p water model topology

Justin A. Lemkul jalemkul at vt.edu
Sat Dec 12 02:21:38 CET 2009

Ramachandran G wrote:
> Dear gmx users,
>         I have created a water box using tip5p model and trying to get 
> the topology file for that using
> pdb2gmx but, i couldn't able to create the topology file and i got the 
> error message
> Fatal error:
> Atom OL1 in residue HO5 1 not found in rtp entry with 5 atoms
>              while sorting atoms
> Can anyone help me what went wrong and how i can rectify it. Thank you.

Please search the list archive and Gromacs website.  This error has come up 
countless times and the solution is spelled out for you if you use these resources.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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