[gmx-users] Hi

XAvier Periole x.periole at rug.nl
Tue Dec 15 10:03:29 CET 2009

try the option -ignh, it will ignore the the hydrogen atoms in your
pdb file and generate the ones necessary to the force field you choose.

On Dec 15, 2009, at 9:52 AM, ashish pandey wrote:

> Dear all,
>             my self ashish and i am trying to dynamics using gromacs.
> i am new in these field. in the time of running Pdb2gmx to create .gro
> file. i am geting these error.
> Fatal error:
> Atom HA in residue MET 1 not found in rtp entry with 9 atoms
> please help me sortout these problem.
> --  
> Ashish Pandey
> NIPER India
> --  
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