[gmx-users] RDF methanol and water

nishap.patel at utoronto.ca nishap.patel at utoronto.ca
Wed Dec 16 21:50:12 CET 2009


HI,

  Okay, so I am trying to plot rdf of one methanol this time in water.  
Is there a way to select methanol molecule as a whole (i.e. get rdf  
from the center of the molecule), instead of Me, O and H. Even though  
I put Me, O and H in same group, I am getting a weird rdf plot  
(Attached to this message).

-Thanks

Nisha P
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0.99 1.00758
0.992 1.03059
0.994 0.951139
0.996 1.00994
0.998 0.96203
1 1.0244
1.002 1.00062
1.004 0.997285
1.006 1.01351
1.008 1.00015
1.01 0.999537
1.012 1.03424
1.014 0.931208
1.016 0.99373
1.018 0.974013
1.02 0.981346
1.022 1.02129
1.024 1.01009
1.026 1.00232
1.028 0.999059
1.03 1.03509
1.032 0.954168
1.034 0.995745
1.036 0.979897
1.038 0.991303
1.04 1.02032
1.042 1.00629
1.044 1.01752
1.046 1.01052
1.048 1.03835
1.05 0.982403
1.052 1.00266
1.054 1.03456
1.056 1.03492
1.058 1.00601
1.06 1.03192
1.062 1.02993
1.064 1.02002
1.066 0.980752
1.068 1.00701
1.07 1.00141
1.072 1.02325
1.074 0.96385
1.076 1.04395
1.078 0.99488
1.08 0.98586
&


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