[gmx-users] help

Tue Dec 22 16:40:07 CET 2009

ashish pandey wrote:
> I wan to make top fil fo my complex having membrane, protein and ion.
> When I use x2top, I took

Using x2top is not appropriate here.  Might I recommend:

http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/index.html

-Justin

> the following error:
> 
> 
> Can not find forcefield for atom OH2-12939 with 2 bonds
> Can not find forcefield for atom OH2-10618 with 2 bonds
> Can not find forcefield for atom OH2-10621 with 2 bonds
> Can not find forcefield for atom OH2-10624 with 2 bonds
> Can not find forcefield for atom OH2-10627 with 2 bonds
> Can not find forcefield for atom OH2-10630 with 2 bonds
> Can not find forcefield for atom OH2-10633 with 2 bonds
> Can not find forcefield for atom OH2-10636 with 2 bonds
> Can not find forcefield for atom OH2-10639 with 2 bonds
> Can not find forcefield for atom OH2-10642 with 2 bonds
> Can not find forcefield for atom OH2-10645 with 2 bonds
> Can not find forcefield for atom OH2-10648 with 2 bonds
> Can not find forcefield for atom OH2-10651 with 2 bonds
> Can not find forcefield for atom OH2-10654 with 3 bonds
> Can not find forcefield for atom H1-10655 with 2 bonds
> Can not find forcefield for atom OH2-10657 with 2 bonds
> Can not find forcefield for atom OH2-10660 with 2 bonds
> Can not find forcefield for atom OH2-10663 with 2 bonds
> Can not find forcefield for atom OH2-10666 with 2 bonds
> Can not find forcefield for atom OH2-10669 with 2 bonds
> Can not find forcefield for atom OH2-10672 with 2 bonds
> Can not find forcefield for atom OH2-10675 with 2 bonds
> Can not find forcefield for atom OH2-10678 with 2 bonds
> Can not find forcefield for atom OH2-10681 with 2 bonds
> Can not find forcefield for atom OH2-10684 with 2 bonds
> Can not find forcefield for atom OH2-10687 with 2 bonds
> Can not find forcefield for atom OH2-10690 with 2 bonds
> Can not find forcefield for atom OH2-10693 with 2 bonds
> Can not find forcefield for atom OH2-10696 with 2 bonds
> Can not find forcefield for atom OH2-10699 with 2 bonds
> Can not find forcefield for atom OH2-10702 with 2 bonds
> Can not find forcefield for atom OH2-10705 with 2 bonds
> Can not find forcefield for atom OH2-10708 with 2 bonds
> Can not find forcefield for atom OH2-10711 with 2 bonds
> Can not find forcefield for atom OH2-10714 with 2 bonds
> Can not find forcefield for atom OH2-10717 with 2 bonds
> Can not find forcefield for atom OH2-10720 with 2 bonds
> Can not find forcefield for atom OH2-10723 with 2 bonds
> Can not find forcefield for atom OH2-10726 with 2 bonds
> Can not find forcefield for atom OH2-10729 with 2 bonds
> Can not find forcefield for atom OH2-10732 with 2 bonds
> Can not find forcefield for atom OH2-10735 with 2 bonds
> Can not find forcefield for atom OH2-10738 with 2 bonds
> Can not find forcefield for atom OH2-10741 with 2 bonds
> Can not find forcefield for atom OH2-10744 with 2 bonds
> Can not find forcefield for atom OH2-10747 with 2 bonds
> Can not find forcefield for atom OH2-10750 with 2 bonds
> Can not find forcefield for atom OH2-10753 with 2 bonds
> Can not find forcefield for atom OH2-10756 with 2 bonds
> Can not find forcefield for atom OH2-10759 with 2 bonds
> Can not find forcefield for atom OH2-10762 with 2 bonds
> Can not find forcefield for atom OH2-10765 with 2 bonds
> Can not find forcefield for atom OH2-10768 with 2 bonds
> Can not find forcefield for atom OH2-10771 with 2 bonds
> Can not find forcefield for atom OH2-10774 with 2 bonds
> Can not find forcefield for atom OH2-10777 with 2 bonds
> Can not find forcefield for atom OH2-10780 with 2 bonds
> Can not find forcefield for atom OH2-10783 with 2 bonds
> Can not find forcefield for atom OH2-10786 with 2 bonds
> Can not find forcefield for atom OH2-10789 with 2 bonds
> Can not find forcefield for atom OH2-10792 with 2 bonds
> Can not find forcefield for atom OH2-10795 with 2 bonds
> Can not find forcefield for atom OH2-10798 with 2 bonds
> Can not find forcefield for atom OH2-10801 with 2 bonds
> Can not find forcefield for atom OH2-10804 with 2 bonds
> Can not find forcefield for atom OH2-10807 with 2 bonds
> Can not find forcefield for atom OH2-10810 with 2 bonds
> Can not find forcefield for atom OH2-10813 with 2 bonds
> Can not find forcefield for atom OH2-10816 with 2 bonds
> Can not find forcefield for atom OH2-10819 with 2 bonds
> Can not find forcefield for atom OH2-10822 with 2 bonds
> Can not find forcefield for atom OH2-10825 with 2 bonds
> Can not find forcefield for atom OH2-10828 with 2 bonds
> Can not find forcefield for atom OH2-10831 with 2 bonds
> Can not find forcefield for atom OH2-10834 with 2 bonds
> Can not find forcefield for atom OH2-10837 with 2 bonds
> Can not find forcefield for atom OH2-10840 with 2 bonds
> Can not find forcefield for atom OH2-10843 with 2 bonds
> Can not find forcefield for atom OH2-10846 with 2 bonds
> Can not find forcefield for atom OH2-10849 with 2 bonds
> Can not find forcefield for atom OH2-10852 with 2 bonds
> Can not find forcefield for atom OH2-10855 with 2 bonds
> Can not find forcefield for atom OH2-10858 with 2 bonds
> Can not find forcefield for atom OH2-10861 with 2 bonds
> Can not find forcefield for atom OH2-10864 with 2 bonds
> Can not find forcefield for atom OH2-10867 with 2 bonds
> Can not find forcefield for atom OH2-10870 with 2 bonds
> Can not find forcefield for atom OH2-10873 with 2 bonds
> Can not find forcefield for atom OH2-10876 with 2 bonds
> Can not find forcefield for atom OH2-10879 with 2 bonds
> Can not find forcefield for atom OH2-10882 with 2 bonds
> Can not find forcefield for atom OH2-10885 with 2 bonds
> Can not find forcefield for atom OH2-10888 with 2 bonds
> Can not find forcefield for atom OH2-10891 with 2 bonds
> Can not find forcefield for atom OH2-10894 with 2 bonds
> Can not find forcefield for atom OH2-10897 with 2 bonds
> Can not find forcefield for atom OH2-10900 with 2 bonds
> Can not find forcefield for atom OH2-10903 with 2 bonds
> Can not find forcefield for atom OH2-10906 with 2 bonds
> Can not find forcefield for atom OH2-10909 with 2 bonds
> Can not find forcefield for atom OH2-10912 with 2 bonds
> Can not find forcefield for atom OH2-10915 with 2 bonds
> Can not find forcefield for atom OH2-10918 with 2 bonds
> Can not find forcefield for atom C11-10922 with 4 bonds
> Can not find forcefield for atom C12-10923 with 4 bonds
> Can not find forcefield for atom C13-10924 with 4 bonds
> Can not find forcefield for atom C14-10925 with 4 bonds
> Can not find forcefield for atom P1-10940 with 0 bonds
> Can not find forcefield for atom O3-10941 with 0 bonds
> Can not find forcefield for atom O4-10942 with 0 bonds
> Can not find forcefield for atom O21-10950 with 2 bonds
> Can not find forcefield for atom C21-10951 with 3 bonds
> Can not find forcefield for atom O22-10952 with 0 bonds
> Can not find forcefield for atom O31-10959 with 2 bonds
> Can not find forcefield for atom C31-10960 with 2 bonds
> Can not find forcefield for atom O32-10961 with 0 bonds
> Can not find forcefield for atom C11-11056 with 4 bonds
> Can not find forcefield for atom C12-11057 with 4 bonds
> Can not find forcefield for atom C13-11058 with 4 bonds
> Can not find forcefield for atom C14-11059 with 4 bonds
> Can not find forcefield for atom P1-11074 with 0 bonds
> Can not find forcefield for atom O3-11075 with 0 bonds
> Can not find forcefield for atom O4-11076 with 0 bonds
> Can not find forcefield for atom O21-11084 with 2 bonds
> Can not find forcefield for atom C21-11085 with 2 bonds
> Can not find forcefield for atom O22-11086 with 0 bonds
> Can not find forcefield for atom C31-11094 with 1 bonds
> Can not find forcefield for atom O32-11095 with 0 bonds
> Can not find forcefield for atom C29-11117 with 3 bonds
> Can not find forcefield for atom C210-11119 with 2 bonds
> Can not find forcefield for atom H11Y-11172 with 0 bonds
> Can not find forcefield for atom C11-11190 with 4 bonds
> Can not find forcefield for atom C12-11191 with 4 bonds
> Can not find forcefield for atom C13-11192 with 4 bonds
> Can not find forcefield for atom C14-11193 with 4 bonds
> Can not find forcefield for atom P1-11208 with 0 bonds
> Can not find forcefield for atom O3-11209 with 0 bonds
> Can not find forcefield for atom O4-11210 with 0 bonds
> Can not find forcefield for atom O21-11218 with 2 bonds
> Can not find forcefield for atom C21-11219 with 2 bonds
> Can not find forcefield for atom O22-11220 with 0 bonds
> Can not find forcefield for atom O31-11227 with 2 bonds
> Can not find forcefield for atom C31-11228 with 3 bonds
> Can not find forcefield for atom C11-11324 with 4 bonds
> Can not find forcefield for atom C12-11325 with 4 bonds
> Can not find forcefield for atom C13-11326 with 4 bonds
> Can not find forcefield for atom C14-11327 with 4 bonds
> Can not find forcefield for atom P1-11342 with 0 bonds
> Can not find forcefield for atom O3-11343 with 1 bonds
> Can not find forcefield for atom O4-11344 with 0 bonds
> Can not find forcefield for atom C1-11347 with 5 bonds
> Can not find forcefield for atom O21-11352 with 2 bonds
> Can not find forcefield for atom C21-11353 with 2 bonds
> Can not find forcefield for atom O22-11354 with 0 bonds
> Can not find forcefield for atom O31-11361 with 2 bonds
> Can not find forcefield for atom C31-11362 with 2 bonds
> Can not find forcefield for atom O32-11363 with 0 bonds
> Can not find forcefield for atom C29-11385 with 2 bonds
> Can not find forcefield for atom C210-11387 with 2 bonds
> Can not find forcefield for atom C11-11458 with 4 bonds
> Can not find forcefield for atom C12-11459 with 4 bonds
> Can not find forcefield for atom C13-11460 with 4 bonds
> Can not find forcefield for atom C14-11461 with 4 bonds
> Can not find forcefield for atom P1-11476 with 1 bonds
> Can not find forcefield for atom O3-11477 with 0 bonds
> Can not find forcefield for atom O4-11478 with 0 bonds
> Can not find forcefield for atom O1-11479 with 2 bonds
> Can not find forcefield for atom O21-11486 with 2 bonds
> Can not find forcefield for atom C21-11487 with 2 bonds
> Can not find forcefield for atom O22-11488 with 0 bonds
> Can not find forcefield for atom O31-11495 with 2 bonds
> Can not find forcefield for atom C31-11496 with 3 bonds
> Can not find forcefield for atom C29-11519 with 2 bonds
> Can not find forcefield for atom C210-11521 with 2 bonds
> Can not find forcefield for atom C11-11592 with 6 bonds
> Can not find forcefield for atom C12-11593 with 4 bonds
> Can not find forcefield for atom C13-11594 with 4 bonds
> Can not find forcefield for atom C14-11595 with 4 bonds
> Can not find forcefield for atom H42-11605 with 2 bonds
> Can not find forcefield for atom C15-11607 with 5 bonds
> Can not find forcefield for atom P1-11610 with 1 bonds
> Can not find forcefield for atom O3-11611 with 0 bonds
> Can not find forcefield for atom O4-11612 with 0 bonds
> Can not find forcefield for atom O1-11613 with 2 bonds
> Can not find forcefield for atom O21-11620 with 2 bonds
> Can not find forcefield for atom C21-11621 with 2 bonds
> Can not find forcefield for atom O22-11622 with 0 bonds
> Can not find forcefield for atom O31-11629 with 2 bonds
> Can not find forcefield for atom C31-11630 with 2 bonds
> Can not find forcefield for atom O32-11631 with 0 bonds
> Can not find forcefield for atom C29-11653 with 2 bonds
> Can not find forcefield for atom C210-11655 with 2 bonds
> Can not find forcefield for atom H16R-11673 with 0 bonds
> Can not find forcefield for atom C11-11726 with 4 bonds
> Can not find forcefield for atom C12-11727 with 4 bonds
> Can not find forcefield for atom C13-11728 with 4 bonds
> Can not find forcefield for atom C14-11729 with 4 bonds
> Can not find forcefield for atom P1-11744 with 0 bonds
> Can not find forcefield for atom O3-11745 with 0 bonds
> Can not find forcefield for atom O4-11746 with 0 bonds
> Can not find forcefield for atom O21-11754 with 2 bonds
> Can not find forcefield for atom C21-11755 with 2 bonds
> Can not find forcefield for atom O22-11756 with 0 bonds
> Can not find forcefield for atom O31-11763 with 2 bonds
> Can not find forcefield for atom C31-11764 with 2 bonds
> Can not find forcefield for atom O32-11765 with 0 bonds
> Can not find forcefield for atom H4X-11820 with 0 bonds
> Can not find forcefield for atom C316-11855 with 5 bonds
> Can not find forcefield for atom OH2-11859 with 2 bonds
> Can not find forcefield for atom OH2-11862 with 2 bonds
> Can not find forcefield for atom OH2-11865 with 2 bonds
> Can not find forcefield for atom OH2-11868 with 3 bonds
> Can not find forcefield for atom OH2-11871 with 2 bonds
> Can not find forcefield for atom OH2-11874 with 2 bonds
> Can not find forcefield for atom OH2-11877 with 2 bonds
> Can not find forcefield for atom OH2-11880 with 2 bonds
> Can not find forcefield for atom OH2-11883 with 2 bonds
> Can not find forcefield for atom OH2-11886 with 2 bonds
> Can not find forcefield for atom OH2-11889 with 2 bonds
> Can not find forcefield for atom OH2-11892 with 2 bonds
> Can not find forcefield for atom OH2-11895 with 2 bonds
> Can not find forcefield for atom OH2-11898 with 2 bonds
> Can not find forcefield for atom OH2-11901 with 2 bonds
> Can not find forcefield for atom OH2-11904 with 2 bonds
> Can not find forcefield for atom OH2-11907 with 2 bonds
> Can not find forcefield for atom OH2-11910 with 2 bonds
> Can not find forcefield for atom OH2-11913 with 2 bonds
> Can not find forcefield for atom OH2-11916 with 2 bonds
> Can not find forcefield for atom OH2-11919 with 2 bonds
> Can not find forcefield for atom OH2-11922 with 2 bonds
> Can not find forcefield for atom OH2-11925 with 2 bonds
> Can not find forcefield for atom OH2-11928 with 2 bonds
> Can not find forcefield for atom OH2-11931 with 2 bonds
> Can not find forcefield for atom OH2-11934 with 2 bonds
> Can not find forcefield for atom OH2-11937 with 2 bonds
> Can not find forcefield for atom OH2-11940 with 2 bonds
> Can not find forcefield for atom OH2-11943 with 2 bonds
> Can not find forcefield for atom OH2-11946 with 2 bonds
> Can not find forcefield for atom OH2-11949 with 2 bonds
> Can not find forcefield for atom OH2-11952 with 2 bonds
> Can not find forcefield for atom OH2-11955 with 2 bonds
> Can not find forcefield for atom OH2-11958 with 2 bonds
> Can not find forcefield for atom OH2-11961 with 2 bonds
> Can not find forcefield for atom OH2-11964 with 2 bonds
> Can not find forcefield for atom OH2-11967 with 2 bonds
> Can not find forcefield for atom OH2-11970 with 2 bonds
> Can not find forcefield for atom OH2-11973 with 2 bonds
> Can not find forcefield for atom OH2-11976 with 3 bonds
> Can not find forcefield for atom OH2-11979 with 2 bonds
> Can not find forcefield for atom OH2-11982 with 2 bonds
> Can not find forcefield for atom OH2-11985 with 2 bonds
> Can not find forcefield for atom OH2-11988 with 2 bonds
> Can not find forcefield for atom OH2-11991 with 2 bonds
> Can not find forcefield for atom OH2-11994 with 2 bonds
> Can not find forcefield for atom OH2-11997 with 2 bonds
> Can not find forcefield for atom OH2-12000 with 2 bonds
> Can not find forcefield for atom OH2-12003 with 2 bonds
> Can not find forcefield for atom OH2-12006 with 2 bonds
> Can not find forcefield for atom OH2-12009 with 2 bonds
> Can not find forcefield for atom OH2-12012 with 2 bonds
> Can not find forcefield for atom OH2-12015 with 2 bonds
> Can not find forcefield for atom OH2-12018 with 2 bonds
> Can not find forcefield for atom OH2-12021 with 2 bonds
> Can not find forcefield for atom OH2-12024 with 2 bonds
> Can not find forcefield for atom OH2-12027 with 2 bonds
> Can not find forcefield for atom OH2-12030 with 2 bonds
> Can not find forcefield for atom OH2-12033 with 2 bonds
> Can not find forcefield for atom OH2-12036 with 2 bonds
> Can not find forcefield for atom OH2-12039 with 2 bonds
> Can not find forcefield for atom OH2-12042 with 2 bonds
> Can not find forcefield for atom OH2-12045 with 2 bonds
> Can not find forcefield for atom OH2-12048 with 2 bonds
> Can not find forcefield for atom OH2-12051 with 2 bonds
> Can not find forcefield for atom OH2-12054 with 2 bonds
> Can not find forcefield for atom OH2-12057 with 2 bonds
> Can not find forcefield for atom OH2-12060 with 2 bonds
> Can not find forcefield for atom OH2-12063 with 2 bonds
> Can not find forcefield for atom OH2-12066 with 2 bonds
> Can not find forcefield for atom OH2-12069 with 2 bonds
> Can not find forcefield for atom OH2-12072 with 2 bonds
> Can not find forcefield for atom OH2-12075 with 2 bonds
> Can not find forcefield for atom OH2-12078 with 2 bonds
> Can not find forcefield for atom H2-12080 with 2 bonds
> Can not find forcefield for atom OH2-12081 with 2 bonds
> Can not find forcefield for atom H1-12082 with 2 bonds
> Can not find forcefield for atom OH2-12084 with 2 bonds
> Can not find forcefield for atom OH2-12087 with 2 bonds
> Can not find forcefield for atom OH2-12090 with 2 bonds
> Can not find forcefield for atom OH2-12093 with 2 bonds
> Can not find forcefield for atom OH2-12096 with 2 bonds
> Can not find forcefield for atom OH2-12099 with 2 bonds
> Can not find forcefield for atom OH2-12102 with 2 bonds
> Can not find forcefield for atom OH2-12105 with 2 bonds
> Can not find forcefield for atom OH2-12108 with 2 bonds
> Can not find forcefield for atom OH2-12111 with 2 bonds
> Can not find forcefield for atom OH2-12114 with 2 bonds
> Can not find forcefield for atom OH2-12117 with 2 bonds
> Can not find forcefield for atom OH2-12120 with 2 bonds
> Can not find forcefield for atom OH2-12123 with 2 bonds
> Can not find forcefield for atom OH2-12126 with 2 bonds
> Can not find forcefield for atom OH2-12129 with 2 bonds
> Can not find forcefield for atom OH2-12132 with 2 bonds
> Can not find forcefield for atom OH2-12135 with 2 bonds
> Can not find forcefield for atom OH2-12138 with 2 bonds
> Can not find forcefield for atom OH2-12141 with 2 bonds
> Can not find forcefield for atom OH2-12144 with 2 bonds
> Can not find forcefield for atom OH2-12147 with 2 bonds
> Can not find forcefield for atom OH2-12150 with 2 bonds
> Can not find forcefield for atom OH2-12153 with 2 bonds
> Can not find forcefield for atom OH2-12156 with 2 bonds
> Can not find forcefield for atom OH2-12159 with 2 bonds
> Can not find forcefield for atom OH2-12162 with 2 bonds
> Can not find forcefield for atom OH2-12165 with 2 bonds
> Can not find forcefield for atom OH2-12168 with 2 bonds
> Can not find forcefield for atom OH2-12171 with 2 bonds
> Can not find forcefield for atom OH2-12174 with 2 bonds
> Can not find forcefield for atom OH2-12177 with 2 bonds
> Can not find forcefield for atom OH2-12180 with 2 bonds
> Can not find forcefield for atom OH2-12183 with 2 bonds
> Can not find forcefield for atom OH2-12186 with 2 bonds
> Can not find forcefield for atom OH2-12189 with 2 bonds
> Can not find forcefield for atom OH2-12192 with 2 bonds
> Can not find forcefield for atom OH2-12195 with 2 bonds
> Can not find forcefield for atom OH2-12198 with 2 bonds
> Can not find forcefield for atom OH2-12201 with 2 bonds
> Can not find forcefield for atom OH2-12204 with 2 bonds
> Can not find forcefield for atom OH2-12207 with 2 bonds
> Can not find forcefield for atom OH2-12210 with 2 bonds
> Can not find forcefield for atom OH2-12213 with 2 bonds
> Can not find forcefield for atom OH2-12216 with 2 bonds
> Can not find forcefield for atom OH2-12219 with 2 bonds
> Can not find forcefield for atom OH2-12222 with 2 bonds
> Can not find forcefield for atom OH2-12225 with 2 bonds
> Can not find forcefield for atom OH2-12228 with 2 bonds
> Can not find forcefield for atom OH2-12231 with 2 bonds
> Can not find forcefield for atom OH2-12234 with 2 bonds
> Can not find forcefield for atom OH2-12237 with 2 bonds
> Can not find forcefield for atom OH2-12240 with 2 bonds
> Can not find forcefield for atom OH2-12243 with 2 bonds
> Can not find forcefield for atom OH2-12246 with 2 bonds
> Can not find forcefield for atom OH2-12249 with 2 bonds
> Can not find forcefield for atom OH2-12252 with 2 bonds
> Can not find forcefield for atom OH2-12255 with 2 bonds
> Can not find forcefield for atom OH2-12258 with 2 bonds
> Can not find forcefield for atom OH2-12261 with 2 bonds
> Can not find forcefield for atom OH2-12264 with 2 bonds
> Can not find forcefield for atom OH2-12267 with 3 bonds
> Can not find forcefield for atom OH2-12270 with 2 bonds
> Can not find forcefield for atom OH2-12273 with 2 bonds
> Can not find forcefield for atom OH2-12276 with 2 bonds
> Can not find forcefield for atom OH2-12279 with 2 bonds
> Can not find forcefield for atom OH2-12282 with 2 bonds
> Can not find forcefield for atom OH2-12285 with 2 bonds
> Can not find forcefield for atom OH2-12288 with 2 bonds
> Can not find forcefield for atom OH2-12291 with 2 bonds
> Can not find forcefield for atom OH2-12294 with 2 bonds
> Can not find forcefield for atom OH2-12297 with 2 bonds
> Can not find forcefield for atom OH2-12300 with 2 bonds
> Can not find forcefield for atom OH2-12303 with 2 bonds
> Can not find forcefield for atom OH2-12306 with 2 bonds
> Can not find forcefield for atom OH2-12309 with 2 bonds
> Can not find forcefield for atom OH2-12312 with 2 bonds
> Can not find forcefield for atom OH2-12315 with 2 bonds
> Can not find forcefield for atom OH2-12318 with 2 bonds
> Can not find forcefield for atom OH2-12321 with 2 bonds
> Can not find forcefield for atom OH2-12324 with 2 bonds
> Can not find forcefield for atom OH2-12327 with 2 bonds
> Can not find forcefield for atom OH2-12330 with 2 bonds
> Can not find forcefield for atom OH2-12333 with 2 bonds
> Can not find forcefield for atom OH2-12336 with 2 bonds
> Can not find forcefield for atom OH2-12339 with 2 bonds
> Can not find forcefield for atom OH2-12342 with 2 bonds
> Can not find forcefield for atom OH2-12345 with 2 bonds
> Can not find forcefield for atom OH2-12348 with 2 bonds
> Can not find forcefield for atom OH2-12351 with 2 bonds
> Can not find forcefield for atom OH2-12354 with 2 bonds
> Can not find forcefield for atom OH2-12357 with 2 bonds
> Can not find forcefield for atom C11-12361 with 5 bonds
> Can not find forcefield for atom C12-12362 with 4 bonds
> Can not find forcefield for atom C13-12363 with 5 bonds
> Can not find forcefield for atom C14-12364 with 4 bonds
> Can not find forcefield for atom H23-12369 with 2 bonds
> Can not find forcefield for atom H41-12373 with 2 bonds
> Can not find forcefield for atom H43-12375 with 2 bonds
> Can not find forcefield for atom C15-12376 with 5 bonds
> Can not find forcefield for atom P1-12379 with 0 bonds
> Can not find forcefield for atom O3-12380 with 0 bonds
> Can not find forcefield for atom O4-12381 with 0 bonds
> Can not find forcefield for atom O21-12389 with 2 bonds
> Can not find forcefield for atom C21-12390 with 3 bonds
> Can not find forcefield for atom O22-12391 with 0 bonds
> Can not find forcefield for atom O31-12398 with 2 bonds
> Can not find forcefield for atom C31-12399 with 2 bonds
> Can not find forcefield for atom O32-12400 with 0 bonds
> Can not find forcefield for atom C11-12495 with 4 bonds
> Can not find forcefield for atom C12-12496 with 4 bonds
> Can not find forcefield for atom C13-12497 with 4 bonds
> Can not find forcefield for atom C14-12498 with 4 bonds
> Can not find forcefield for atom P1-12513 with 0 bonds
> Can not find forcefield for atom O3-12514 with 0 bonds
> Can not find forcefield for atom O4-12515 with 0 bonds
> Can not find forcefield for atom O21-12523 with 2 bonds
> Can not find forcefield for atom C21-12524 with 2 bonds
> Can not find forcefield for atom O22-12525 with 0 bonds
> Can not find forcefield for atom C31-12533 with 1 bonds
> Can not find forcefield for atom O32-12534 with 0 bonds
> Can not find forcefield for atom C29-12556 with 3 bonds
> Can not find forcefield for atom C210-12558 with 2 bonds
> Can not find forcefield for atom H11Y-12611 with 0 bonds
> Can not find forcefield for atom C11-12629 with 6 bonds
> Can not find forcefield for atom C12-12630 with 4 bonds
> Can not find forcefield for atom C13-12631 with 4 bonds
> Can not find forcefield for atom C14-12632 with 4 bonds
> Can not find forcefield for atom H42-12642 with 2 bonds
> Can not find forcefield for atom C15-12644 with 5 bonds
> Can not find forcefield for atom P1-12647 with 1 bonds
> Can not find forcefield for atom O3-12648 with 0 bonds
> Can not find forcefield for atom O4-12649 with 0 bonds
> Can not find forcefield for atom O1-12650 with 2 bonds
> Can not find forcefield for atom O21-12657 with 2 bonds
> Can not find forcefield for atom C21-12658 with 2 bonds
> Can not find forcefield for atom O22-12659 with 0 bonds
> Can not find forcefield for atom O31-12666 with 2 bonds
> Can not find forcefield for atom C31-12667 with 2 bonds
> Can not find forcefield for atom O32-12668 with 0 bonds
> Can not find forcefield for atom C29-12690 with 2 bonds
> Can not find forcefield for atom C210-12692 with 2 bonds
> Can not find forcefield for atom H16R-12710 with 0 bonds
> Can not find forcefield for atom OH2-12762 with 2 bonds
> Can not find forcefield for atom OH2-12765 with 2 bonds
> Can not find forcefield for atom OH2-12768 with 2 bonds
> Can not find forcefield for atom OH2-12771 with 2 bonds
> Can not find forcefield for atom OH2-12774 with 2 bonds
> Can not find forcefield for atom OH2-12777 with 2 bonds
> Can not find forcefield for atom OH2-12780 with 2 bonds
> Can not find forcefield for atom OH2-12783 with 2 bonds
> Can not find forcefield for atom OH2-12786 with 2 bonds
> Can not find forcefield for atom OH2-12789 with 2 bonds
> Can not find forcefield for atom OH2-12792 with 2 bonds
> Can not find forcefield for atom OH2-12795 with 2 bonds
> Can not find forcefield for atom OH2-12798 with 2 bonds
> Can not find forcefield for atom OH2-12801 with 2 bonds
> Can not find forcefield for atom OH2-12804 with 2 bonds
> Can not find forcefield for atom OH2-12807 with 2 bonds
> Can not find forcefield for atom OH2-12810 with 2 bonds
> Can not find forcefield for atom OH2-12813 with 2 bonds
> Can not find forcefield for atom OH2-12816 with 2 bonds
> Can not find forcefield for atom OH2-12819 with 2 bonds
> Can not find forcefield for atom OH2-12822 with 2 bonds
> Can not find forcefield for atom OH2-12825 with 2 bonds
> Can not find forcefield for atom OH2-12828 with 2 bonds
> Can not find forcefield for atom OH2-12831 with 2 bonds
> Can not find forcefield for atom OH2-12834 with 2 bonds
> Can not find forcefield for atom OH2-12837 with 2 bonds
> Can not find forcefield for atom OH2-12840 with 2 bonds
> Program x2top, VERSION 3.3.3
> Source code file: x2top.c, line: 206
> 
> Fatal error:
> Could only find a forcefield type for 10110 out of 12941 atoms
> 
> 
> what should be the problem.
> and how can i solve it.
> Ashish Pandey
> NIPER India

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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