[gmx-users] Depth of penetration of DMPC lipid bilayer. How?

Kirill Bessonov kbessonov at gmail.com
Wed Dec 23 17:27:17 CET 2009

Dear gromacs pros,

I need to calculate depth of DMPC bilayer penetration by my 14 aa long
peptide. I'm not sure how to do it, but I have tried g_dist program and
calculated distance between DMPC and peptide groups for every frame of
simulation. Is that correct way of doing it or maybe there is a better
way?   I've got xvg file. First column is time and second is distance in

Thank you
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