[gmx-users] Depth of penetration of DMPC lipid bilayer. How?

[Pavan Ghatty]

Hi Kirill,
Although I can't directly address your question, I came across some recent
work dealing with depth of penetration in lipid bilayers. May be the authors
could help you.
http://www3.interscience.wiley.com/journal/122351396/abstract
<http://www3.interscience.wiley.com/journal/122351396/abstract>Hope this
helps.
Pavan

On Wed, Dec 23, 2009 at 11:27 AM, Kirill Bessonov <kbessonov at gmail.com>wrote:

> Dear gromacs pros,
>
> I need to calculate depth of DMPC bilayer penetration by my 14 aa long
> peptide. I'm not sure how to do it, but I have tried g_dist program and
> calculated distance between DMPC and peptide groups for every frame of
> simulation. Is that correct way of doing it or maybe there is a better
> way?   I've got xvg file. First column is time and second is distance in
> Amstrongs?
>
> Thank you
>
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