[gmx-users] Porcupine Plots

Mark Abraham Mark.Abraham at anu.edu.au
Mon Feb 2 06:28:49 CET 2009

nahren manuel wrote:
> Dear Gromacs Users,
> I have done PCA of my MD , I want to visually represent the motions in 
> terms of porcupine plots. I came across Dynamite (web server) for this 
> purpose. But it only considers 500 frames of the xtc file.
> Is there any other way how i could generate porcupine plots based on 
> tools of GROMACS ?

I've never heard of such plots - perhaps you should look for pointers 
wherever you came across them in the first place?

Users on this list might help with some nuts and bolts, but first you 
need to make sure we can have access to useful information - like URLs 
and algorithm descriptions.


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