[gmx-users] Porcupine Plots

[Diego Enry Gomes]

Check the VMD list, you should find the script there.

On Feb 1, 2009, at 9:28 PM, Mark Abraham wrote:

> nahren manuel wrote:
>> Dear Gromacs Users,
>> I have done PCA of my MD , I want to visually represent the motions  
>> in terms of porcupine plots. I came across Dynamite (web server)  
>> for this purpose. But it only considers 500 frames of the xtc file.
>> Is there any other way how i could generate porcupine plots based  
>> on tools of GROMACS ?
>
> I've never heard of such plots - perhaps you should look for  
> pointers wherever you came across them in the first place?
>
> Users on this list might help with some nuts and bolts, but first  
> you need to make sure we can have access to useful information -  
> like URLs and algorithm descriptions.
>
> Mark
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