[gmx-users] analyzing beta factor

[özge kül]

From: [EMAIL PROTECTED] [EMAIL PROTECTED] On Behalf Of Alif M Latif
Sent: 02 May 2008 09:42
To: gmx-users at gromacs.org
Subject: [gmx-users] Plotting B-factor

Dear GROMACS users and developers,

I want to plot B-factor of a protein structure against residue. How can I do 
that?. Using option -oq in g_rmsf only produce bfac.pdb which is in .pdb file 
and assigned at each atom. Is there another way I can get the plot B-factor vs 
residue?. Any link to example or tutorial will be very helpful.
Comments and Suggestions are greatly appreciated. Thank you.

Muhammad Alif Mohammad Latif
Department of Chemistry
Faculty of Science
Universiti Putra Malaysia
43400 UPM Serdang, Selangor
MALAYSIA


--- On Wed, 2/4/09, David van der Spoel <spoel at xray.bmc.uu.se> wrote:
From: David van der Spoel <spoel at xray.bmc.uu.se>
Subject: Re: [gmx-users] analyzing beta factor
To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
Date: Wednesday, February 4, 2009, 2:16 AM

özge kül wrote:
> Hi users,
> 
> I want to plot beta factor versus residue number plot at the analyzing
part.I read manual and search in the web but I could not find a reasonable
result for this plot.I wonder if anybody know about it.
> 
What is the beta factor?


> Thank you,
> Özge
> 
> 
> 
> ------------------------------------------------------------------------
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-- David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
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