[gmx-users] Place compound in membrane

Casey,Richard Richard.Casey at ColoState.EDU
Fri Feb 6 21:22:12 CET 2009


We've been able to merge a compound in a membrane (popc128) with 

genbox -cp compound.pdb -cs popc128a.pdb -box 8 8 8 -o compound_in_popc128.pdb -p compound.top

however it places the compound near the edge of the membrane.  We would like to place the compound at other (various) locations in the membrane.  Does anyone know how to do this?  


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