[gmx-users] how to get a solvent density map using volumeslice in VMD

[Jinyao Wang]

Hi gmx-users,
I want to get a solvent density map like that in the link http://p13.freep.cn/p.aspx?u=v20_p13_p_0902131629052385_0.bmp
So I use g_spatial to calculate the spatial distribution function and get a *.cube file.
I load the *.cube file into VMD and view it as an volumeslice but no anything is displayed.
how can I get the solvent density map? If you have some experience,please give me some suggestion.


 				

　　　　　　　　Jinyao Wang
　　　　　　　　wangjy at ciac.jl.cn
　　　　　　　　　　2009-02-13