[gmx-users] GROMACS Error

[Srinivasan Ramachandran]

Hi,
Can anyone help with the error we are getting while running this tutorial.

command is
grompp –f em.mdp –c trp_b4em.pdb –p trp.top –o em.tpr

error is
Number of coordinates in coordinate file (trp_b4em.pdb, 28381) does not
match with topology file(trp.top, 28397)

We follow as per the guide but quite not able to figure out where the error
is?

With Kind Regards

Ramu
Dr. S. Ramachandran
Scientist EI
Institute of Genomics and Integrative Biology, Mall Road, Near Jubilee Hall
Delhi 110 007, India
Tel: 2766-6156
Fax:2766-7471
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