[gmx-users] GROMACS Error

Srinivasan Ramachandran ramu at osdd.org
Tue Feb 17 12:49:56 CET 2009

Can anyone help with the error we are getting while running this tutorial.

command is
grompp –f em.mdp –c trp_b4em.pdb –p trp.top –o em.tpr

error is
Number of coordinates in coordinate file (trp_b4em.pdb, 28381) does not
match with topology file(trp.top, 28397)

We follow as per the guide but quite not able to figure out where the error

With Kind Regards

Dr. S. Ramachandran
Scientist EI
Institute of Genomics and Integrative Biology, Mall Road, Near Jubilee Hall
Delhi 110 007, India
Tel: 2766-6156
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