[gmx-users] problems with pdb2gmx command

[jaharvey at chem.umass.edu]

I'm having issues with the pdb2gmx command in gromacs. It does not seem to be
creating the .gro file for some reason. When I enter the command:

pdb2gmx -f trial1.pdb -p trial1.top -o trial1.gro

I only end with a trial1.top file but no trial1.gro file. However, the pdb2gmx
command appears to work fine with the tutorial files that the developers have
provided. Any suggestions? Thanks in advance.

Jacob A. Harvey

jaharvey at chem.umass.edu

Chemistry