[gmx-users] problems with pdb2gmx command

[Tsjerk Wassenaar]

Hi Jacob,

Check the output from pdb2gmx.
It works with the tutorial files, so the problem is with your input,
not with the program.

Tsjerk

On Thu, Jan 22, 2009 at 5:39 PM,  <jaharvey at chem.umass.edu> wrote:
> I'm having issues with the pdb2gmx command in gromacs. It does not seem to be
> creating the .gro file for some reason. When I enter the command:
>
> pdb2gmx -f trial1.pdb -p trial1.top -o trial1.gro
>
> I only end with a trial1.top file but no trial1.gro file. However, the pdb2gmx
> command appears to work fine with the tutorial files that the developers have
> provided. Any suggestions? Thanks in advance.
>
> Jacob A. Harvey
>
> jaharvey at chem.umass.edu
>
> Chemistry
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
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