[gmx-users] GridMat MD Plot

Justin A. Lemkul jalemkul at vt.edu
Tue Jul 14 13:25:52 CEST 2009


We recently released version 1.0.2, which contains an accessory script for 
properly formatting the output data for GNUPlot.  Please download the new 
version, read the documentation, and try again.


Anirban Ghosh wrote:
> Hi ALL,
> I ran a membrane simulation and for analysis I came across the GridMat 
> MD software. However I am not able to plot the output values (Z values 
> of a 20x20 matrix) as given in 
> http://bevanlab.biochem.vt.edu/GridMAT-MD/examples.html .
> In my system Xmatrix is not working and I am trying to use GNUPlot for 
> plotting. But I am not able to plot them properly. Can anyone suggest me 
> how to plot the single column Z values in GNUPlot to get a contour map? 
> Any suggestion is welcome.
> Regards,
> *Anirban Ghosh*
> *Grade Based Engineer
> Bioinformatics Team
> Centre for Development of Advanced Computing (C-DAC)
> Pune, India
> *
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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