[gmx-users] Protein going out of the box

[Omer Markovitch]

Try using trjconv. Look at the -pbc options and also maybe -center options.
--Omer.

Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905
http://www.weizmann.ac.il/sb/faculty_pages/Levy/


On Wed, Jul 15, 2009 at 10:09, nikhil damle <pdnikhil at yahoo.co.in> wrote:

> but peptide remains inside the box while protein is seen outside.
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090715/0db6144d/attachment.html>