[gmx-users] Protein going out of the box

Omer Markovitch omermar at gmail.com
Wed Jul 15 14:59:28 CEST 2009

Try using trjconv. Look at the -pbc options and also maybe -center options.

Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905

On Wed, Jul 15, 2009 at 10:09, nikhil damle <pdnikhil at yahoo.co.in> wrote:

> but peptide remains inside the box while protein is seen outside.
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