[gmx-users] Error in hdb file ffG43a1p.hdb

[Mark Abraham]

Thamu wrote:
> Hi,
> 
> i am trying to run md for protein-peptide complex. the peptide has
> phosphorylated tyrosine.
> 
> i got the following error when i run pdb2gmx
> 
> Fatal error:
> Error in hdb file ffG43a1p.hdb:
> Wrong number of control atoms (2 iso 3) on line:
>     1    1    N    -C    CA
> 
> 
> I would greatly appreciate if some one help me to solve this error.

Read each dot point in section 5.6.2. You've omitted a necessary field.

Mark