[gmx-users] infinite surface

Giulio Scocchi giulio.scocchi at icimsi.ch
Wed Jul 29 13:35:12 CEST 2009

Hello everybody.


I am a Gromacs beginner, so sorry if this question is trivial and/or I
am not precise. I would like to simulate an infinite surface of graphene
(or any other planar lattice structure). Gromacs supports pbc also in
two directions (as far as I understood) and that would really be perfect
for my purposes but.. in order to have a periodic infinite lattice, I
need to have atoms on one face of the cell being connected to the atoms
on the opposite face. So, how can I do this? Just by modifying the
CONNECT section of the input .pdb file? Will gmx programs understand? J


Thank you in advance!







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