[gmx-users] Viewing Trajectories with VMD

Joshua Adelman jadelman at berkeley.edu
Fri Jul 31 01:12:24 CEST 2009

Hi Nancy,

Is it loading it in, but not displaying it? If that's the case, you  
need to load a pdb file in first or else VMD can't guess how to  
display the molecule from position data only. If that's not the  
problem, then you're going to have to give more information than just  
that it doesn't work.


On Jul 30, 2009, at 4:07 PM, Nancy wrote:

> Hello,
> I have generated several trajectory files (*.trr, *.xtc) from  
> running MD simulations, and I can view them with the "ngmx" program  
> included with GROMACS, but I am unable to view them in Visual  
> Molecular Dynamics (VMD).  Please advise.
> Thanks,
> Nancy
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before  
> posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

Joshua L. Adelman
Biophysics Graduate Group              Lab: 510.643.2159
218 Wellman Hall                                Fax: 510.642.7428
University of California, Berkeley     http://nature.berkeley.edu/ 
Berkeley, CA 94720 USA                   jadelman at berkeley.edu

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090730/af4e8f18/attachment.html>

More information about the gromacs.org_gmx-users mailing list