[gmx-users] Viewing Trajectories with VMD

[Nancy]

Thanks, it works.


Nancy




On Thu, Jul 30, 2009 at 7:12 PM, Joshua Adelman <jadelman at berkeley.edu>wrote:

> Hi Nancy,
> Is it loading it in, but not displaying it? If that's the case, you need to
> load a pdb file in first or else VMD can't guess how to display the molecule
> from position data only. If that's not the problem, then you're going to
> have to give more information than just that it doesn't work.
>
> Josh
>
>
> On Jul 30, 2009, at 4:07 PM, Nancy wrote:
>
> Hello,
>
> I have generated several trajectory files (*.trr, *.xtc) from running MD
> simulations, and I can view them with the "ngmx" program included with
> GROMACS, but I am unable to view them in Visual Molecular Dynamics (VMD).
> Please advise.
>
> Thanks,
>
> Nancy
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> ------------------------------------------------------------------------------------------------------
> Joshua L. Adelman
> Biophysics Graduate Group              Lab: 510.643.2159
> 218 Wellman Hall                                Fax: 510.642.7428
> University of California, Berkeley
> http://nature.berkeley.edu/~jadelman<http://nature.berkeley.edu/%7Ejadelman>
> Berkeley, CA 94720 USA                   jadelman at berkeley.edu
>
> ------------------------------------------------------------------------------------------------------
>
>
>
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