[gmx-users] lincs warning

Mark Abraham Mark.Abraham at anu.edu.au
Wed Jun 3 09:51:18 CEST 2009

XAvier Periole wrote:
> Dears,
> I am experiencing some problems running a few proteins in water 
> (GROMOS43a1/SPC)
> with gmx-4.0.4 using 32 CPUs.
> After some ns lincs warnings appear and eventually the simulation 
> crashes dues
> to too many lincs warnings.
> When restarting the simulation feeding "-cpi md.cpt" to mdrun the 
> simulation restarts
> fine and no lincs warning are reported on the same portion of the 
> simulation. The
> simulation runs again for some ns and the same happens: new lincs 
> warning appear
> and eventually the simulation crashes again.
> Any explanation for this? Any solution?

Check out 4.0.5 release notes? Check out 4.0.5?


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