June 2009 Archives by date

Messages sorted by: [ thread ] [ subject ] [ author ]
More info on this list...

Starting: Mon Jun 1 08:24:41 CEST 2009
Ending: Tue Jun 30 22:18:56 CEST 2009
Messages: 755

[gmx-users] Re: Extend water layer along negative Z-direction Anirban Ghosh
[gmx-users] Re: Extend water layer along negative Z-direction Tsjerk Wassenaar
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Stefano Meliga
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization XAvier Periole
[gmx-users] crystals of KCl during simulation Rebeca García Fandiño
[gmx-users] Re: solution molecules cannot be set by mdrun after neutralization Mark Abraham
[gmx-users] crystals of KCl during simulation Mark Abraham
[gmx-users] crystals of KCl during simulation Marc Baaden
[gmx-users] Extend water layer along negative Z-direction Chris Neale
[gmx-users] crystals of KCl during simulation Rebeca García Fandiño
[gmx-users] crystals of KCl during simulation David van der Spoel
[gmx-users] crystals of KCl during simulation Rebeca García Fandiño
[gmx-users] crystals of KCl during simulation moura at ufscar.br
[gmx-users] crystals of KCl during simulation Rebeca García Fandiño
[gmx-users] crystals of KCl during simulation David van der Spoel
[gmx-users] Fatal error:Library file aminoacids.dat not found in current dir nor in default directories Jinyao Wang
[gmx-users] Re: gmx-users Digest, Vol 62, Issue 4 Alan Chen
[gmx-users] Fatal error:Library file aminoacids.dat not found in current dir nor in default directories Mark Abraham
[gmx-users] installation Samik Bhattacharya
[gmx-users] installation Manik Mayur
[gmx-users] installation Mark Abraham
[gmx-users] Fwd: Segmentation fault while running gromacs 4.0.4 Ms. Aswathy S
[gmx-users] Fwd: Segmentation fault while running gromacs 4.0.4 Mark Abraham
[gmx-users] plain cutoff coulomb Cheong Wee Loong, Daniel
[gmx-users] plain cutoff coulomb Mark Abraham
[gmx-users] Gromacs 4.0.4 problem in extending MARTINI run by 600 ns, but no problem extending run by 60 ns using tpbconv himanshu khandelia
[gmx-users] Gromacs 4.0.4 problem in extending MARTINI run by 600 ns, but no problem extending run by 60 ns using tpbconv Mark Abraham
[gmx-users] mdrun seems stuck Stefano Meliga
[gmx-users] mdrun seems stuck Stefano Meliga
[gmx-users] mdrun seems stuck Jussi Lehtola
[gmx-users] installation Nuno Azoia
[gmx-users] mdrun seems stuck Nuno Azoia
[gmx-users] segfault(11) -- simulation blows up on first step Inon Sharony
[gmx-users] segfault(11) -- simulation blows up on first step Itamar Kass
[gmx-users] segfault(11) -- simulation blows up on first step Inon Sharony
[gmx-users] segfault(11) -- simulation blows up on first step Justin A. Lemkul
[gmx-users] problem with generation of .gro file subarna thakur
[gmx-users] problem with generation of .gro file Justin A. Lemkul
[gmx-users] Normal of the benzene and z axis. Eudes Fileti
[gmx-users] crystals of KCl during simulation moura at ufscar.br
[gmx-users] g_dist gmx-users-bounces at gromacs.org
[gmx-users] installation Mark Abraham
[gmx-users] Normal of the benzene and z axis. Mark Abraham
[gmx-users] gromacs invsqrt() overlaps with icc invsqrt() chris.neale at utoronto.ca
[gmx-users] gromacs invsqrt() overlaps with icc invsqrt() Mark Abraham
[gmx-users] Fatal error:Library file aminoacids.dat not found in current dir nor in default directories Oliver Stueker
[gmx-users] installation Nuno Azoia
[gmx-users] Computer simulation details Pramod Akula
[gmx-users] Computer simulation details Kukol, Andreas
[gmx-users] crystals of KCl during simulation Rebeca García Fandiño
[gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture) Justin A. Lemkul
[gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture) Shay Amram
[gmx-users] Re: [gmx-developers] Fwd: Simulating Gases with GROMACS 4.0 Justin A. Lemkul
[gmx-users] crystals of KCl during simulation Mark Abraham
[gmx-users] Fatal error:Library file aminoacids.dat not found in current dir nor in default directories Mark Abraham
[gmx-users] PME on BlueGene Jakob Wohlert
[gmx-users] PME on BlueGene Mark Abraham
[gmx-users] PME on BlueGene He, Yang
[gmx-users] problem in equilibration step nitu sharma
[gmx-users] problem in equilibration step Mark Abraham
[gmx-users] Problem in fianl step of MD rituraj purohit
[gmx-users] Problem in fianl step of MD Mark Abraham
[gmx-users] gromacs invsqrt() overlaps with icc invsqrt() Tsjerk Wassenaar
[gmx-users] problem in inflategro Samik Bhattacharya
[gmx-users] lincs warning XAvier Periole
[gmx-users] lincs warning Mark Abraham
[gmx-users] Fwd: problem with FES4 cluster Tsjerk Wassenaar
[gmx-users] lincs warning XAvier Periole
[gmx-users] lincs warning Ran Friedman
[gmx-users] lincs warning XAvier Periole
[gmx-users] .itp file for an electrode Negar Ashari Astani
[gmx-users] .itp file for an electrode Kukol, Andreas
[gmx-users] problem with FeS cluster subarna thakur
[gmx-users] lincs warning Erik Marklund
[gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture) Shay Amram
[gmx-users] g_dist: extract distances between any two atom pairs Joern Lenz
[gmx-users] lincs warning Giovanni Bussi
[gmx-users] lincs warning XAvier Periole
[gmx-users] lincs warning XAvier Periole
[gmx-users] problem in inflategro Justin A. Lemkul
[gmx-users] problem with FeS cluster Justin A. Lemkul
[gmx-users] g_dist: extract distances between any two atom pairs Justin A. Lemkul
[gmx-users] problem with FeS cluster subarna thakur
[gmx-users] Re: Normal of the benzene and z axis. Eudes Fileti
[gmx-users] Re: Normal of the benzene and z axis. David van der Spoel
[gmx-users] Re: Re: Normal of the benzene and z axis. Eudes Fileti
[gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture) Nicolas Sapay
[gmx-users] Re: Re: Normal of the benzene and z axis. David van der Spoel
[gmx-users] problem with FeS cluster Justin A. Lemkul
[gmx-users] protein running out of box sheerychen
[gmx-users] protein running out of box Justin A. Lemkul
[gmx-users] protein running out of box ravi sharma
[gmx-users] spc.itp for the amber force field Rebeca García Fandiño
[gmx-users] Some questions regarding generating topologies Manik Mayur
[gmx-users] Some questions regarding generating topologies Justin A. Lemkul
[gmx-users] Some questions regarding generating topologies Manik Mayur
[gmx-users] Some questions regarding generating topologies Justin A. Lemkul
[gmx-users] PME on BlueGene Jakob Wohlert
[gmx-users] Gromacs output analysis rituraj purohit
[gmx-users] Gromacs output analysis XAvier Periole
[gmx-users] Gromacs output analysis Justin A. Lemkul
[gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture) Shay Amram
[gmx-users] g_dist: extract distances between any two atom pairs Erik Marklund
[gmx-users] ??using pull code when orientation of system changes during MD?? DayleMarieSmith at gmail.com
[gmx-users] spc.itp for the amber force field Mark Abraham
[gmx-users] PME on BlueGene Mark Abraham
[gmx-users] about PMF calculation mircial at sjtu.edu.cn
[gmx-users] Replacing the PRODRG charges Lucio Ricardo Montero Valenzuela
[gmx-users] Replacing the PRODRG charges Mark Abraham
[gmx-users] how to include ionic strength amri ta
[gmx-users] how to include ionic strength Mark Abraham
[gmx-users] DSSP problem rituraj purohit
[gmx-users] DSSP problem Mark Abraham
[gmx-users] DSSP problem rituraj purohit
[gmx-users] gromos type in .rtp file subarna thakur
[gmx-users] gromos type in .rtp file XAvier Periole
[gmx-users] DSSP problem Manik Mayur
[gmx-users] gromacs website: "(There is currently no text in this page)" pim schravendijk
[gmx-users] gromacs website: "(There is currently no text in this page)" Justin A. Lemkul
[gmx-users] gromacs website: "(There is currently no text in this page)" pim schravendijk
[gmx-users] gromacs website: "(There is currently no text in this page)" Mark Abraham
[gmx-users] diffusion coefficient with g_msd Sarah Witzke
[gmx-users] Entending water in negative Z direction Anirban Ghosh
[gmx-users] DSSP problem Mark Abraham
[gmx-users] Replacing the PRODRG charges Lucio Ricardo Montero Valenzuela
[gmx-users] Scaled 1-5 interactions Borys Szefczyk
[gmx-users] Entending water in negative Z direction David van der Spoel
[gmx-users] Entending water in negative Z direction chris.neale at utoronto.ca
[gmx-users] Replacing the PRODRG charges Justin A. Lemkul
[gmx-users] Entending water in negative Z direction Tsjerk Wassenaar
[gmx-users] Replacing the PRODRG charges Marc F. Lensink
[gmx-users] overrriding problem Rebeca García Fandiño
[gmx-users] Re: goverrriding problem Alan
[gmx-users] g_hbond error krishnakumar
[gmx-users] g_hbond error Justin A. Lemkul
[gmx-users] Re: goverrriding problem Rebeca García Fandiño
[gmx-users] Scaled 1-5 interactions Mark Abraham
[gmx-users] reference group in constant velocity pulling, GMX 4 Simba Xiao
[gmx-users] Re: Extending water in negative Z direction Anirban Ghosh
[gmx-users] Re: Extending water in negative Z direction David van der Spoel
[gmx-users] Re: Extending water in negative Z direction Tsjerk Wassenaar
[gmx-users] diffusion coefficient with g_msd XAvier Periole
[gmx-users] Scaled 1-5 interactions Borys Szefczyk
[gmx-users] g_hbond error Erik Marklund
[gmx-users] conversion to tip5p Dmitri Dubov
SV: [gmx-users] diffusion coefficient with g_msd Sarah Witzke
SV: [gmx-users] diffusion coefficient with g_msd XAvier Periole
[gmx-users] conversion to tip5p Manik Mayur
[gmx-users] conversion to tip5p Justin A. Lemkul
[gmx-users] Pressure and NVT Simulations Manik Mayur
[gmx-users] Pressure and NVT Simulations Jussi Lehtola
[gmx-users] Pressure and NVT Simulations Manik Mayur
[gmx-users] Pressure and NVT Simulations Jussi Lehtola
[gmx-users] Scaled 1-5 interactions Florian Dommert
SV: SV: [gmx-users] diffusion coefficient with g_msd Sarah Witzke
SV: SV: [gmx-users] diffusion coefficient with g_msd Justin A. Lemkul
[gmx-users] Scaled 1-5 interactions David van der Spoel
[gmx-users] Reg. g_density Jagan Mohan
[gmx-users] Reg. g_density Tsjerk Wassenaar
[gmx-users] PME nodes XAvier Periole
[gmx-users] Reg. g_density Jagan Mohan
[gmx-users] Reg. g_density Tsjerk Wassenaar
[gmx-users] PME nodes David van der Spoel
[gmx-users] PME nodes Justin A. Lemkul
[gmx-users] PME nodes XAvier Periole
[gmx-users] PME nodes David van der Spoel
[gmx-users] Scaled 1-5 interactions Florian Dommert
[gmx-users] g_helix command error Chitrita Dutta Roy
[gmx-users] Nonrepeatable results for gromacs 4.0.5 Jim Kress
[gmx-users] Nonrepeatable results for gromacs 4.0.5 David van der Spoel
[gmx-users] Scaled 1-5 interactions Borys Szefczyk
[gmx-users] reg aCTIVE SITE vidhya sankar
[gmx-users] reg aCTIVE SITE Justin A. Lemkul
[gmx-users] Scaled 1-5 interactions Florian Dommert
[gmx-users] Scaled 1-5 interactions Borys Szefczyk
[gmx-users] how to run with mpi? Joseph Johnson
[gmx-users] about epsion_surface lammps lammps
[gmx-users] how to include Fe-S topology in .rtp file amri ta
[gmx-users] Nonrepeatable results for gromacs 4.0.5 Erik Lindahl
[gmx-users] problem in running grompp Samik Bhattacharya
[gmx-users] PME nodes Carsten Kutzner
[gmx-users] PME nodes Andrei Neamtu
[gmx-users] problem in running grompp Justin A. Lemkul
[gmx-users] how to include Fe-S topology in .rtp file Justin A. Lemkul
[gmx-users] PME nodes Carsten Kutzner
[gmx-users] Nonrepeatable results for gromacs 4.0.5 jimkress_58
[gmx-users] Nonrepeatable results for gromacs 4.0.5 Erik Marklund
[gmx-users] about epsion_surface Mark Abraham
[gmx-users] gromacs on glacier Payman Pirzadeh
[gmx-users] Energies in simulation Payman Pirzadeh
[gmx-users] Energies in simulation David van der Spoel
[gmx-users] Energies in simulation Payman Pirzadeh
[gmx-users] gromacs on glacier Justin A. Lemkul
[gmx-users] Energies in simulation David van der Spoel
[gmx-users] Energies in simulation Payman Pirzadeh
[gmx-users] Energies in simulation David van der Spoel
[gmx-users] gromacs on glacier Payman Pirzadeh
[gmx-users] Energies in simulation Payman Pirzadeh
[gmx-users] gromacs on glacier Justin A. Lemkul
[gmx-users] Energies in simulation David van der Spoel
[gmx-users] gromacs on glacier Payman Pirzadeh
[gmx-users] Energies in simulation Payman Pirzadeh
[gmx-users] gromacs on glacier Justin A. Lemkul
[gmx-users] best way to generate .pdb files? Joseph Johnson
[gmx-users] best way to generate .pdb files? Justin A. Lemkul
[gmx-users] Suggestion for g_tune_pme Jim Kress
[gmx-users] Suggestion for g_tune_pme Jim Kress
[gmx-users] zero surface tension lammps lammps
[gmx-users] problem with trjconv nitu sharma
[gmx-users] problem with trjconv Mark Abraham
[gmx-users] Shell dynamics with vdW terms. Rafael Rodríguez Pappalardo
[gmx-users] Shell dynamics with vdW terms. Berk Hess
[gmx-users] problem in running grompp Samik Bhattacharya
[gmx-users] problem in running grompp Justin A. Lemkul
[gmx-users] trouble for old/new GROMACS site Anna Marabotti
[gmx-users] trouble for old/new GROMACS site Justin A. Lemkul
[gmx-users] Shell dynamics with vdW terms. Rafael Rodríguez Pappalardo
[gmx-users] Shell dynamics with vdW terms. Berk Hess
[gmx-users] units of eigenvalues of mass-weighted covariance matrix Wang Qin
[gmx-users] non-standard residues in pdb2gmx Gard Nelson
[gmx-users] non-standard residues in pdb2gmx Justin A. Lemkul
[gmx-users] units of eigenvalues of mass-weighted covariance matrix Mark Abraham
[gmx-users] non-standard residues in pdb2gmx Tsjerk Wassenaar
[gmx-users] Shell dynamics with vdW terms. Rafael Rodríguez Pappalardo
[gmx-users] units of eigenvalues of mass-weighted covariance matrix Tsjerk Wassenaar
[gmx-users] x2top_d running for too long vivek sharma
[gmx-users] x2top_d running for too long Mark Abraham
[gmx-users] units of eigenvalues of mass-weighted covariance matrix Berk Hess
[gmx-users] Shell dynamics with vdW terms. Berk Hess
[gmx-users] Re: trouble for old/new GROMACS site Anna Marabotti
[gmx-users] Re: trouble for old/new GROMACS site Mark Abraham
[gmx-users] x2top_d running for too long vivek sharma
[gmx-users] x2top_d running for too long David van der Spoel
[gmx-users] problem in running grompp Samik Bhattacharya
[gmx-users] Re: problem in running grompp Justin A. Lemkul
[gmx-users] vdwradii.dat - where do the values come from? João M. Damas
[gmx-users] problem fitting trajectory Rebeca García Fandiño
[gmx-users] problem fitting trajectory Justin A. Lemkul
[gmx-users] Small molecule-protein complexes MD simulations Andrew Voronkov
[gmx-users] problem fitting trajectory Tsjerk Wassenaar
[gmx-users] Small molecule-protein complexes MD simulations Mark Abraham
[gmx-users] g_energy returns the instantaneous data or the average data? Chih-Ying Lin
[gmx-users] g_energy returns the instantaneous data or the average data? Mark Abraham
[gmx-users] problem fitting trajectory Daniel Adriano Silva M
[gmx-users] problem regarding removal of water from final simulation system. nitu sharma
[gmx-users] problem regarding removal of water from final simulation system. Dallas B. Warren
[gmx-users] problem regarding removal of water from final simulation system. Mark Abraham
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed Thamu
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed Jussi Lehtola
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed Mark Abraham
[gmx-users] Implicit walls. Yves Dubief
[gmx-users] gmx_blast error when attempting to run in parallel Sashank Karri
[gmx-users] gmx_blast error when attempting to run in parallel David van der Spoel
[gmx-users] gmx_blast error when attempting to run in parallel Justin A. Lemkul
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed Thamu
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed Mark Abraham
[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed jimkress_58
[gmx-users] Re: gmx-users Digest, Vol 62, Issue 57 Thamu
[gmx-users] Re: gmx-users Digest, Vol 62, Issue 57 Justin A. Lemkul
[gmx-users] Re: gromacs-4.0.5 parallel run in 8 cpu: slow speed Thamu
[gmx-users] Alternative TRP residue abelius
[gmx-users] Re: Issues regarding exclusions and Charge group distribution Manik Mayur
[gmx-users] Re: Alternative TRP residue Gerrit Groenhof
[gmx-users] Re: gromacs-4.0.5 parallel run in 8 cpu: slow speed David van der Spoel
[gmx-users] Alternative TRP residue David van der Spoel
[gmx-users] Alternative TRP residue Lucio Ricardo Montero Valenzuela
[gmx-users] Announcement: Structure-based model webtool for Gromacs Paul Whitford
Fwd: [its-cluster-admin] Fwd: [gmx-users] gmx_blast error when attempting to run in parallel Sashank Karri
Fwd: [its-cluster-admin] Fwd: [gmx-users] gmx_blast error when attempting to run in parallel Erik Marklund
Fwd: [its-cluster-admin] Fwd: [gmx-users] gmx_blast error when attempting to run in parallel Justin A. Lemkul
Fwd: [its-cluster-admin] Fwd: [gmx-users] gmx_blast error when attempting to run in parallel Erik Marklund
Fwd: [its-cluster-admin] Fwd: [gmx-users] gmx_blast error when attempting to run in parallel Roland Schulz
[gmx-users] gmxtest Jones de Andrade
[gmx-users] gmxtest Justin A. Lemkul
[gmx-users] Form of 10-4 Wall Potential Function. ttrudeau
[gmx-users] fatal error when using Martini CG force field lammps lammps
[gmx-users] Re: fatal error when using Martini CG force field lammps lammps
[gmx-users] Problem in Martini simulation with gromacs version 4.0.4 works fine with gromacs 3.3.1 error G96Angle of 2395 missing lammps lammps
[gmx-users] Re: fatal error when using Martini CG force field Justin A. Lemkul
[gmx-users] Re: Issues regarding exclusions and Charge group distribution Mark Abraham
[gmx-users] Re: Issues regarding exclusions and Charge group distribution Manik Mayur
[gmx-users] Re: Issues regarding exclusions and Charge group distribution Mark Abraham
[gmx-users] How can I create the OPLS-AA topology file for the liagnd Ms. Aswathy S
[gmx-users] fatal error when using Martini CG force field XAvier Periole
[gmx-users] How can I create the OPLS-AA topology file for the liagnd Mark Abraham
[gmx-users] How can I create the OPLS-AA topology file for the liagnd David van der Spoel
[gmx-users] ERROR: pressure coupling not enough values (I need 1) Ms. Aswathy S
[gmx-users] ERROR: pressure coupling not enough values (I need 1) Justin A. Lemkul
[gmx-users] Re: gromacs-4.0.5 parallel run in 8 cpu: slow speed jimkress_58
[gmx-users] ERROR: pressure coupling not enough values (I need 1) Ms. Aswathy S
[gmx-users] ERROR: pressure coupling not enough values (I need 1) Justin A. Lemkul
[gmx-users] Re: Alternative TRP residue abelius
[gmx-users] Re: Alternative TRP residue Justin A. Lemkul
[gmx-users] Re: Alternative TRP residue abelius
[gmx-users] Re: Alternative TRP residue Justin A. Lemkul
[gmx-users] Re: Alternative TRP residue abelius
[gmx-users] Question about applying a restriction on the movement of a molecule in z direction.... Alberto Sergio Garay
[gmx-users] Form of 10-4 Wall Potential Function. Berk Hess
[gmx-users] Bug/typo in ffG53a5/ffG53a6.rtp Justin A. Lemkul
[gmx-users] Bug/typo in ffG53a5/ffG53a6.rtp Justin A. Lemkul
[gmx-users] ab initio parallel tempering Anthony Costa
[gmx-users] Question about applying a restriction on the movement of a molecule in z direction.... Mark Abraham
[gmx-users] ab initio parallel tempering Mark Abraham
[gmx-users] Error in hdb file ffG43a1.hdb Ms. Aswathy S
[gmx-users] Error in hdb file ffG43a1.hdb Ms. Aswathy S
[gmx-users] Re: Alternative TRP residue Omer Markovitch
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] PDB format (was Re: Alternative TRP residue) Justin A. Lemkul
[gmx-users] Re: Alternative TRP residue Justin A. Lemkul
[gmx-users] problem in ngmx Florian Dommert
[gmx-users] problem in ngmx Manik Mayur
[gmx-users] problem in ngmx Jussi Lehtola
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] prodrg 4.5beta generated topologies and exclusions Dean Cuebas
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] Re: gmx-users Digest, Vol 62, Issue 68 Gerrit Groenhof
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Strange error in DNA simulations.. Bhanu
[gmx-users] Strange error in DNA simulations.. Mark Abraham
[gmx-users] Strange error in DNA simulations.. Bhanu
[gmx-users] Strange error in DNA simulations.. Mark Abraham
[gmx-users] Strange error in DNA simulations.. Bhanu
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] Simulation Temperature for GPCR in POPC bilayer Anirban Ghosh
[gmx-users] Simulation Temperature for GPCR in POPC bilayer Justin A. Lemkul
[gmx-users] -ighn failing with ffamber Alan
[gmx-users] prodrg 4.5beta generated topologies and exclusions Mark Abraham
[gmx-users] -ighn failing with ffamber Justin A. Lemkul
[gmx-users] adding a negative two charged ion CandyCandy
[gmx-users] adding a negative two charged ion Justin A. Lemkul
[gmx-users] help with the topology file danilo gonzalez
[gmx-users] Re: -ighn failing with ffamber Alan
[gmx-users] Making a .pdb file that actually works? Joseph Johnson
[gmx-users] Making a .pdb file that actually works? Justin A. Lemkul
[gmx-users] help with the topology file Justin A. Lemkul
[gmx-users] Re: -ighn failing with ffamber Justin A. Lemkul
[gmx-users] Re: -ighn failing with ffamber Alan
[gmx-users] Re: -ighn failing with ffamber Justin A. Lemkul
[gmx-users] B3LYP/6-31++G** GAMESS derived charges to replace PRODRG assigned ones naimah haron naimah
[gmx-users] B3LYP/6-31++G** GAMESS derived charges to replace PRODRG assigned ones Justin A. Lemkul
[gmx-users] pdb does not work. Joseph Johnson
[gmx-users] pdb does not work. Dallas B. Warren
[gmx-users] pdb does not work. Mark Abraham
[gmx-users] replacing PRODRG charges with GAMESS charges naimah haron naimah
[gmx-users] replacing PRODRG charges with GAMESS charges Mark Abraham
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Bug/typo in ffG53a5/ffG53a6.rtp Berk Hess
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] local pressure calculation anirban polley
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Electrostatic forces Berk Hess
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] problem in dna-protein simulation nitu sharma
[gmx-users] problem in dna-protein simulation Justin A. Lemkul
[gmx-users] PBC Andy Torres
[gmx-users] problem in dna-protein simulation Bhanu
[gmx-users] PBC Justin A. Lemkul
[gmx-users] MPI gromacs under cygwin Dmitri Dubov
[gmx-users] MPI gromacs under cygwin Mark Abraham
[gmx-users] Merge + CHARMM? Alessandro.Maiorana at roma2.infn.it
[gmx-users] How to add connectivity information in the trajectory file? Liao Chuan
[gmx-users] Merge + CHARMM? Justin A. Lemkul
[gmx-users] can someone generate a pdb file for me :) Joseph Johnson
[gmx-users] can someone generate a pdb file for me :) Justin A. Lemkul
[gmx-users] mpi mdrun jayant james
[gmx-users] How to add connectivity information in the trajectory file? Mark Abraham
[gmx-users] mpi mdrun Mark Abraham
[gmx-users] local pressure calculation Mark Abraham
[gmx-users] Re:How to add connectivity information in the trajectoryfile? Liao Chuan
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] Website Problem darrellk at ece.ubc.ca
[gmx-users] Electrostatic forces Mark Abraham
[gmx-users] Website Problem Mark Abraham
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] Electrostatic forces Mark Abraham
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] Website Problem darrellk at ece.ubc.ca
[gmx-users] Website Problem Mark Abraham
[gmx-users] Electrostatic forces Mark Abraham
[gmx-users] protein in SDS/water Anna Marabotti
[gmx-users] protein in SDS/water Mark Abraham
[gmx-users] Re: -ighn failing with ffamber Alan
[gmx-users] programmes to have in double precision besides mdrun_d Alan
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] programmes to have in double precision besides mdrun_d Justin A. Lemkul
[gmx-users] PBC Omer Markovitch
[gmx-users] programmes to have in double precision besides mdrun_d Berk Hess
[gmx-users] Electrostatic forces Berk Hess
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] problem in ngmx Marc F. Lensink
[gmx-users] regarding genhydro.c/pdb2gmx algorithm prasun kumar
[gmx-users] regarding genhydro.c/pdb2gmx algorithm Mark Abraham
[gmx-users] problem in ngmx Justin A. Lemkul
[gmx-users] Re: protein in SDS/water Anna Marabotti
[gmx-users] Re: protein in SDS/water Justin A. Lemkul
[gmx-users] programmes to have in double precision besides mdrun_d Jussi Lehtola
[gmx-users] programmes to have in double precision besides mdrun_d Erik Marklund
[gmx-users] Re: protein in SDS/water Mark Abraham
[gmx-users] Re: protein in SDS/water Thomas Schlesier
[gmx-users] Electrostatic forces Florian Dommert
[gmx-users] problem in ngmx Ms. Aswathy S
[gmx-users] Re: protein in SDS/water Justin A. Lemkul
[gmx-users] programmes to have in double precision besides mdrun_d Berk Hess
[gmx-users] covalent bond lookup table Stefano Meliga
[gmx-users] Electrostatic forces Mark Abraham
[gmx-users] Re: protein in SDS/water Mark Abraham
[gmx-users] covalent bond lookup table Mark Abraham
[gmx-users] Re: protein in SDS/water Anna Marabotti
[gmx-users] RE: programmes to have in double precision besides mdrun_d Alan
[gmx-users] Re: protein in SDS/water Justin A. Lemkul
[gmx-users] Re: Some questions about OPLS/Berger combination] chris.neale at utoronto.ca
[gmx-users] Re: protein in SDS/water Anna Marabotti
[gmx-users] Re: protein in SDS/water Justin A. Lemkul
[gmx-users] Free energy videos from EMBO course Ragnarok sdf
[gmx-users] Stop the simulation after a particular condition is fulfilled animesh agarwal
[gmx-users] The Cut-off for coulombtype heat up the water system? Yanmei Song
[gmx-users] Stop the simulation after a particular condition is fulfilled Mark Abraham
[gmx-users] The Cut-off for coulombtype heat up the water system? Justin A. Lemkul
[gmx-users] mpi mdrun jayant james
[gmx-users] x2top danilo gonzalez
[gmx-users] pulling molecule insert into DPPC lipid bilayer wara boon
[gmx-users] mpi mdrun Mark Abraham
[gmx-users] pulling molecule insert into DPPC lipid bilayer Mark Abraham
[gmx-users] mpi mdrun jayant james
[gmx-users] mpi mdrun Mark Abraham
[gmx-users] error pull MD wara boon
[gmx-users] error pull MD Mark Abraham
[gmx-users] x2top David van der Spoel
[gmx-users] Re: Some questions about OPLS/Berger combination] Dorota Jamróz
[gmx-users] How to obtain the .gro and .top files for dendrimers wuxiao
[gmx-users] How to obtain the .gro and .top files for dendrimers David van der Spoel
[gmx-users] How to obtain the .gro and .top files for dendrimers Mark Abraham
[gmx-users] Re: How to obtain the .gro and .top files for dendrimers wuxiao
[gmx-users] Re: How to obtain the .gro and .top files for dendrimers Mark Abraham
[gmx-users] Parallel computation in Gromacs 3.2.1 Reg. chandran karunakaran
[gmx-users] Parallel computation in Gromacs 3.2.1 Reg. Mark Abraham
[gmx-users] problem in grompp -broken charge Samik Bhattacharya
[gmx-users] problem in grompp -broken charge Mark Abraham
[gmx-users] make install 'only suffix append binaries' Alan
[gmx-users] make install 'only suffix append binaries' Mark Abraham
[gmx-users] Re: Re: protein in SDS/water Anna Marabotti
[gmx-users] make install 'only suffix append binaries' Alan
[gmx-users] mpi mdrun jayant james
[gmx-users] mpi mdrun Jussi Lehtola
[gmx-users] mpi mdrun Mark Abraham
[gmx-users] Re: Re: protein in SDS/water Mark Abraham
[gmx-users] The Cut-off for coulombtype heat up the water system? Yanmei Song
[gmx-users] The Cut-off for coulombtype heat up the water system? David van der Spoel
[gmx-users] The Cut-off for coulombtype heat up the water system? Justin A. Lemkul
[gmx-users] The Cut-off for coulombtype heat up the water system? Yanmei Song
[gmx-users] g_order and the tpr file Age.Skjevik at biomed.uib.no
[gmx-users] g_order and the tpr file Justin A. Lemkul
[gmx-users] Final Temp = 303 K ? Chih-Ying Lin
[gmx-users] mpi mdrun jayant james
[gmx-users] Final Temp = 303 K ? Justin A. Lemkul
[gmx-users] g_energy Chih-Ying Lin
[gmx-users] g_energy Justin A. Lemkul
[gmx-users] more digits Shuangxing Dai
[gmx-users] mpi mdrun Justin A. Lemkul
[gmx-users] Final Temp = 303 K ? Chih-Ying Lin
[gmx-users] Final Temp = 303 K ? Justin A. Lemkul
[gmx-users] g_energy => both instantaneous and average Chih-Ying Lin
[gmx-users] coulombtype = Reaction-Field => heat up the system Chih-Ying Lin
[gmx-users] g_energy => RMSD = Standard Deviation? Chih-Ying Lin
[gmx-users] g_energy => RMSD = Standard Deviation? Justin A. Lemkul
[gmx-users] trjconv -pbc -center Chih-Ying Lin
[gmx-users] trjconv -pbc -center Justin A. Lemkul
[gmx-users] trjconv -pbc -center Daniel Adriano Silva M
[gmx-users] trjconv -pbc atom -center rect Chih-Ying Lin
[gmx-users] more digits Mark Abraham
[gmx-users] The Cut-off for coulombtype heat up the water system? Chih-Ying Lin
[gmx-users] Re: x2top (David van der Spoel) danilo gonzalez
[gmx-users] The Cut-off for coulombtype heat up the water system? Mark Abraham
[gmx-users] Re: x2top (David van der Spoel) Mark Abraham
[gmx-users] g_energy => RMSD vs Fluctuation Chih-Ying Lin
[gmx-users] more digits David van der Spoel
[gmx-users] Final Temp = 303 K ? XAvier Periole
[gmx-users] trjconv -pbc atom -center rect XAvier Periole
[gmx-users] What can I to do with the problem: lincs warning and water can not be settled? xiao shijun
[gmx-users] What can I to do with the problem: lincs warning and water can not be settled? Mark Abraham
[gmx-users] g_energy => RMSD = Standard Deviation? Tsjerk Wassenaar
[gmx-users] problem after genion Velia Minicozzi
[gmx-users] [Fwd: problem after genion] Velia Minicozzi
[gmx-users] pullx.xvg ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] gromacs 4.0.4 and 4.0.5 mhviet at ifpan.edu.pl
[gmx-users] Re: Some questions about OPLS/Berger combination chris.neale at utoronto.ca
[gmx-users] Re: Some questions about OPLS/Berger combination Dorota Jamróz
[gmx-users] trjconv -pbc nojump -center rect => does not work Chih-Ying Lin
[gmx-users] g_energy => the reasonable range of RMSD or Fluctuation ? Chih-Ying Lin
[gmx-users] trjconv -pbc nojump -center rect => does not work Justin A. Lemkul
[gmx-users] g_coord => command not found Chih-Ying Lin
[gmx-users] g_energy => the reasonable range of RMSD or Fluctuation ? Tsjerk Wassenaar
[gmx-users] g_coord => command not found Justin A. Lemkul
[gmx-users] g_coord => command not found Justin A. Lemkul
[gmx-users] g_coord => command not found Justin A. Lemkul
[gmx-users] bond constraint noob noob
[gmx-users] bond constraint Justin A. Lemkul
[gmx-users] The Cut-off for coulombtype heat up the water system? Florian Dommert
[gmx-users] The Cut-off for coulombtype heat up the water system? Florian Dommert
[gmx-users] The Cut-off for coulombtype heat up the water system? XAvier Periole
[gmx-users] Having trouble getting gromacs installed. Dave Hassan
[gmx-users] Having trouble getting gromacs installed. Justin A. Lemkul
[gmx-users] What is the important thing when we are watching the MD trajectory movie? Chih-Ying Lin
[gmx-users] What is the important thing when we are watching the MD trajectory movie? Mark Abraham
[gmx-users] The Cut-off for coulombtype heat up the water system? Florian Dommert
[gmx-users] The Cut-off for coulombtype heat up the water system? Mark Abraham
[gmx-users] The Cut-off for coulombtype heat up the water system? Florian Dommert
[gmx-users] Simulation crashes (Gromacs 4.0.5) Baudilio Tejerina
[gmx-users] The Cut-off for coulombtype heat up the water system? Mark Abraham
[gmx-users] Simulation crashes (Gromacs 4.0.5) Mark Abraham
[gmx-users] Coordinates change after minimization Ms. Aswathy S
[gmx-users] Coordinates change after minimization Justin A. Lemkul
[gmx-users] Coordinates change after minimization David van der Spoel
[gmx-users] Coordinates change after minimization Ms. Aswathy S
[gmx-users] Coordinates change after minimization XAvier Periole
[gmx-users] The Cut-off for coulombtype heat up the water system? Florian Dommert
[gmx-users] Coordinates change after minimization Ms. Aswathy S
[gmx-users] Coordinates change after minimization Mark Abraham
[gmx-users] Coordinates change after minimization XAvier Periole
[gmx-users] non squares box Omer Markovitch
[gmx-users] non squares box Tsjerk Wassenaar
[gmx-users] non squares box Omer Markovitch
[gmx-users] non squares box Mark Abraham
[gmx-users] non squares box Tsjerk Wassenaar
[gmx-users] Re: Request Justin A. Lemkul
[gmx-users] non squares box Omer Markovitch
[gmx-users] non squares box David van der Spoel
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] simulation of protein in presence of ATP Mark Abraham
[gmx-users] simulation of protein in presence of ATP Lucio Ricardo Montero Valenzuela
[gmx-users] about stretch protein using gromacs 4.0 umbrella options mhviet at ifpan.edu.pl
[gmx-users] How to extend correctly pulling simulation? mhviet at ifpan.edu.pl
[gmx-users] problems with some calculated trajectories Bernhard Knapp
[gmx-users] How to increase the number of parameters in dihedral angle potentials? bhong at Princeton.EDU
[gmx-users] problems with some calculated trajectories Erik Marklund
[gmx-users] parallel computing akalabya bissoyi
[gmx-users] How to extend correctly pulling simulation? Berk Hess
[gmx-users] parallel computing Carsten Kutzner
[gmx-users] -bash: /home_soft/soft_chem/soft_install/gromac/bin/GMXRC.bash: No such file or directory Jinyao Wang
[gmx-users] problems with some calculated trajectories Martin Höfling
[gmx-users] problems with some calculated trajectories Martin Höfling
[gmx-users] -bash: /home_soft/soft_chem/soft_install/gromac/bin/GMXRC.bash: No such file or directory Justin A. Lemkul
[gmx-users] How to increase the number of parameters in dihedral angle potentials? Mark Abraham
[gmx-users] -bash: /home_soft/soft_chem/soft_install/gromac/bin/GMXRC.bash: No such file or directory Mark Abraham
[gmx-users] GROMACS file formats Santanu Ch
[gmx-users] GROMACS file formats Mark Abraham
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] simulation of protein in presence of ATP Mark Abraham
[gmx-users] GROMACS file formats David van der Spoel
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] simulation of protein in presence of ATP Mark Abraham
[gmx-users] Parameters for -Si-Si- chains? Semen Esilevsky
[gmx-users] Parameters for -Si-Si- chains? Tsjerk Wassenaar
[gmx-users] How to increase the number of parameters in dihedral angle potentials? Berk Hess
[gmx-users] How to freeze the atoms? toby10222224 at sina.com
[gmx-users] How to freeze the atoms? Mark Abraham
[gmx-users] Problem in energy minimization for a empty membrane system Bing Bing
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] Re: How to freeze the atoms? Vitaly V. Chaban
[gmx-users] pullx.xvg Meaning of output? ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] simulation of protein in presence of ATP Justin A. Lemkul
[gmx-users] Problem in energy minimization for a empty membrane system Justin A. Lemkul
[gmx-users] pullx.xvg Meaning of output? Berk Hess
[gmx-users] pullx.xvg Meaning of output? ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] genbox error at futil.c iulek
[gmx-users] Parameters for -Si-Si- chains? Semen Esilevsky
[gmx-users] genbox error at futil.c Justin A. Lemkul
[gmx-users] parallel processing using LAN akalabya bissoyi
[gmx-users] Problem in energy minimization for a empty membrane system Bing Bing
[gmx-users] genbox error at futil.c iulek
[gmx-users] Parameters for -Si-Si- chains? Florian Dommert
[gmx-users] Problem in energy minimization for a empty membrane system Justin A. Lemkul
[gmx-users] genbox error at futil.c Justin A. Lemkul
[gmx-users] Problem in energy minimization for a empty membrane system Bing Bing
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] pullx.xvg Meaning of output? Berk Hess
[gmx-users] Problem in energy minimization for a empty membrane system Justin A. Lemkul
[gmx-users] simulation of protein in presence of ATP Justin A. Lemkul
[gmx-users] simulation of protein in presence of ATP Mark Abraham
[gmx-users] parallel processing using LAN Mark Abraham
[gmx-users] impose a external magnetic field 风大
[gmx-users] impose a external magnetic field David van der Spoel
[gmx-users] mdrun -c option "did not work" Jérôme Baffreau
[gmx-users] mdrun -c option "did not work" David van der Spoel
[gmx-users] WARNING: negative index -1 in group System Christopher Rowan
[gmx-users] Re: WARNING: negative index -1 in group System Christopher Rowan
[gmx-users] WARNING: negative index -1 in group System Justin A. Lemkul
Re: 回复：[gmx-users] Re: How to freeze the atoms? Vitaly V. Chaban
[gmx-users] Problem in energy minimization for a empty membrane system Bing Bing
[gmx-users] Problem in energy minimization for a empty membrane system Mark Abraham
[gmx-users] dmso topology Markus Tusch
[gmx-users] simulation of protein in presence of ATP nikhil damle
Re: 回复：Re: 回复：[gmx-users] Re: How to freeze the atoms? Vitaly V. Chaban
[gmx-users] Re: dmso topology Vitaly V. Chaban
[gmx-users] Problem in energy minimization for a empty membrane system Justin A. Lemkul
[gmx-users] simulation of protein in presence of ATP Justin A. Lemkul
[gmx-users] Small organic molecules Stefan Frieder Hopp
[gmx-users] mdrun -c option "did not work" Jérôme Baffreau
[gmx-users] mdrun -c option "did not work" Mark Abraham
[gmx-users] Small organic molecules Justin A. Lemkul
[gmx-users] disable ulimit Gustavo Fioravanti
[gmx-users] WARNING: negative index -1 in group System Christopher Rowan
[gmx-users] Installation problem:fftw3f lib. not found. Shobhit Kudesia
[gmx-users] Installation problem:fftw3f lib. not found. Florian Dommert
[gmx-users] WARNING: negative index -1 in group System Justin A. Lemkul
[gmx-users] handling particle decomposition with distance restraints jayant james
[gmx-users] handling particle decomposition with distance restraints Justin A. Lemkul
[gmx-users] handling particle decomposition with distance restraints jayant james
[gmx-users] handling particle decomposition with distance restraints Justin A. Lemkul
[gmx-users] About charge group wuxiao
[gmx-users] About charge group Justin A. Lemkul
[gmx-users] About charge group Mark Abraham
[gmx-users] handling particle decomposition with distance restraints jayant james
[gmx-users] handling particle decomposition with distance restraints Justin A. Lemkul
[gmx-users] About charge group(Mark) wuxiao
[gmx-users] Force field problems Michael McGovern
[gmx-users] About charge group(Mark) Mark Abraham
[gmx-users] Force field problems Mark Abraham
[gmx-users] About charge group(Mark) wuxiao
[gmx-users] Problem wih Fe-S cluster subarna thakur
[gmx-users] Can N(CH2)3 be set a charge group? wuxiao
[gmx-users] Can N(CH2)3 be set a charge group? Berk Hess
[gmx-users] Problem wih Fe-S cluster Tsjerk Wassenaar
[gmx-users] Re: Re: problems with some calculated trajectories Bernhard Knapp
[gmx-users] Re: Re: problems with some calculated trajectories Tsjerk Wassenaar
[gmx-users] Re: Re: problems with some calculated trajectories Mark Abraham
[gmx-users] Re: Re: problems with some calculated trajectories Berk Hess
[gmx-users] Problem in energy minimization for a empty membrane system Bing Bing
[gmx-users] Problem in energy minimization for a empty membrane system Mark Abraham
[gmx-users] Re: Re: Re: Re: problems with some calculated trajectories Bernhard Knapp
[gmx-users] pullx.xvg Meaning of output? ilona.baldus at bioquant.uni-heidelberg.de
[gmx-users] Re: Re: Re: Re: problems with some calculated trajectories Erik Marklund
[gmx-users] angle Morteza Khabiri
[gmx-users] use of LAN for parallel processing akalabya bissoyi
[gmx-users] pullx.xvg Meaning of output? Berk Hess
[gmx-users] use of LAN for parallel processing Mark Abraham
[gmx-users] Re: How to freeze the atoms? Vitaly V. Chaban
[gmx-users] use of LAN for parallel processing Alexandre Suman de Araujo
[gmx-users] angle Mark Abraham
[gmx-users] use of LAN for parallel processing Mark Abraham
[gmx-users] angle Morteza Khabiri
[gmx-users] handling particle decomposition with distance restraints jayant james
[gmx-users] handling particle decomposition with distance restraints chris.neale at utoronto.ca
[gmx-users] handling particle decomposition with distance restraints Chris Neale
[gmx-users] handling particle decomposition with distance restraints Chris Neale
[gmx-users] simulation of protein in presence of ATP nikhil damle
[gmx-users] mdrun -c option "did not work" Jérôme Baffreau
[gmx-users] grommp errors wuxiao
[gmx-users] grommp errors Justin A. Lemkul
[gmx-users] mdrun -c option "did not work" Justin A. Lemkul
[gmx-users] g_dist: Indexfile seem to be NOT optional Christian Seifert
[gmx-users] Ligand & Receptor Jack Shultz
[gmx-users] Ligand & Receptor Justin A. Lemkul
[gmx-users] Re: Ligand & Receptor Alan
[gmx-users] Re: Ligand & Receptor Jack Shultz
[gmx-users] file conversion from Amber to GROMACS for protein-ligand complexes Andrew Voronkov
[gmx-users] 45a4 force field files to nucleic acids simulations Guilherme Menegon Giesel
[gmx-users] simulation of protein in presence of ATP Lucio Montero
[gmx-users] 45a4 force field files to nucleic acids simulations Tsjerk Wassenaar
[gmx-users] pdb2gmx fatal error Dave Hassan
[gmx-users] pdb2gmx fatal error Justin A. Lemkul
[gmx-users] 45a4 force field files to nucleic acids simulations Guilherme Menegon Giesel
[gmx-users] C6 constant units Vitaly V. Chaban
[gmx-users] Dihedral functions AverettDevin
[gmx-users] C6 constant units Florian Dommert
[gmx-users] how to search in the new GROMACS website ? LeeHwan-kyu
[gmx-users] Dihedral functions Kukol, Andreas
[gmx-users] install DSSP ??? Chih-Ying Lin
[gmx-users] Install DSSP=> cannot execute binary file ??? Chih-Ying Lin
[gmx-users] force Shuangxing Dai
[gmx-users] Input output file error s lal badshah
[gmx-users] Input output file error David van der Spoel
[gmx-users] force Florian Dommert
[gmx-users] force Shuangxing Dai
[gmx-users] force Florian Dommert
[gmx-users] force Shuangxing Dai
[gmx-users] What much time does DSSP need to analyze lysozyme? Chih-Ying Lin
[gmx-users] How much does DSSP need to analyze lysozyme? => more than one hour Chih-Ying Lin
[gmx-users] DSSP hangs for days sharada
[gmx-users] force Florian Dommert
[gmx-users] Lipid bilayer moved apart Bing Bing
[gmx-users] Lipid bilayer moved apart shayamra at post.tau.ac.il
[gmx-users] What much time does DSSP need to analyze lysozyme? Mark Abraham
[gmx-users] DSSP hangs for days Mark Abraham
[gmx-users] mdrun -c option "did not work" Mark Abraham
[gmx-users] how to search in the new GROMACS website ? Justin A. Lemkul
[gmx-users] How much does DSSP need to analyze lysozyme? => more than one hour Justin A. Lemkul
[gmx-users] stopping and restarting a simulations after adding more constraints jayant james
[gmx-users] stopping and restarting a simulations after adding more constraints Tsjerk Wassenaar
[gmx-users] force Shuangxing Dai
[gmx-users] How can i make the DSSP picture like picture 8.10 in the Maunual ? Chih-Ying Lin
[gmx-users] How can i make the DSSP picture like picture 8.10 in the Maunual ? Justin A. Lemkul
[gmx-users] Non-bonded Copper Matthew Roode
[gmx-users] Non-bonded Copper Mark Abraham
[gmx-users] Lipid bilayer moved apart Bing Bing
[gmx-users] Lipid bilayer moved apart Justin A. Lemkul
[gmx-users] Non-bonded Copper Tsjerk Wassenaar
[gmx-users] 4.0.5 Installation error Manik Mayur
[gmx-users] Re: 4.0.5 Installation error Manik Mayur
[gmx-users] 4.0.5 Installation error Mark Abraham
[gmx-users] DSSP hangs for days Carsten Kutzner
[gmx-users] 4.0.5 Installation error Manik Mayur
[gmx-users] DSSP hangs for days sharada
[gmx-users] problem of getting with Dssp subarna thakur
[gmx-users] problem of getting with Dssp Volker Wirth
[gmx-users] DSSP hangs for days Carsten Kutzner
[gmx-users] SD temperature coupling groups Inon Sharony
[gmx-users] protonation state with pdb2gmx Yamin, Peyman
[gmx-users] protonation state with pdb2gmx Justin A. Lemkul
AW: [gmx-users] protonation state with pdb2gmx Yamin, Peyman
AW: [gmx-users] protonation state with pdb2gmx Justin A. Lemkul
[gmx-users] disable ulimit Ansgar Esztermann
[gmx-users] Artificial Shear Flow and Inconsistent Shift Error He, Yang
[gmx-users] Making sure I understand an error Michael Lerner
[gmx-users] Making sure I understand an error XAvier Periole
[gmx-users] What method (algorimth) is used to calculate volume of a protein? mhviet at ifpan.edu.pl
[gmx-users] Conversion of units to nm in .xyz or pdb Jennifer Williams
[gmx-users] Conversion of units to nm in .xyz or pdb Justin A. Lemkul
[gmx-users] Installation with non standard location of fftw3 Graham Kettlewell
[gmx-users] the warning about the -rerun Jinyao Wang
[gmx-users] Installation with non standard location of fftw3 Justin A. Lemkul
[gmx-users] Installation with non standard location of fftw3 Justin A. Lemkul
[gmx-users] Installation with non standard location of fftw3 Graham Kettlewell
[gmx-users] Installation with non standard location of fftw3 Justin A. Lemkul
[gmx-users] Installation with non standard location of fftw3 Graham Kettlewell
[gmx-users] Installation with non standard location of fftw3 Justin A. Lemkul
[gmx-users] the warning about the -rerun XAvier Periole
[gmx-users] parameters of Fe-S cluster subarna thakur
[gmx-users] error P.R.Anand Narayanan
[gmx-users] Can the Ifdef option be used in the rtp file? wuxiao
[gmx-users] Can the Ifdef option be used in the rtp file? David van der Spoel
[gmx-users] g_potential calculation method Negar Ashari Astani
[gmx-users] Installation with non standard location of fftw3 Justin A. Lemkul
[gmx-users] error Justin A. Lemkul
[gmx-users] Re: SD temperature coupling groups A.Rzepiela
[gmx-users] merge two PDBs Peyman Yamin
[gmx-users] merge two PDBs Justin A. Lemkul
[gmx-users] merge two PDBs Erik Marklund
[gmx-users] few doubts regarding 1-4 interaction Ms. Aswathy S
[gmx-users] Chlorophyll force field parameters Julien Maupetit
[gmx-users] few doubts regarding 1-4 interaction Justin A. Lemkul
[gmx-users] Chlorophyll force field parameters XAvier Periole
[gmx-users] Table Functions Devin Averett
[gmx-users] Charge pertubation Jessé Nóbrega
[gmx-users] g_tune_pme in Ranger Patricia Soto
[gmx-users] Re: gmx-users Digest, Vol 62, Issue 158 Vitaly V. Chaban

Last message date: Tue Jun 30 22:18:56 CEST 2009
Archived on: Thu Nov 14 12:06:57 CET 2013

Messages sorted by: [ thread ] [ subject ] [ author ]
More info on this list...

This archive was generated by Pipermail 0.09 (Mailman edition).