[gmx-users] g_dist: extract distances between any two atom pairs

[Joern Lenz]

Dear Gromacs Users,


I need to extract all possible distances between any two atom pairs of a small 
hexa- to dodecamer from a trajectory. The same is necessary for all dihedral 
angles of this protein. Now I wonder if this is possible without defining all 
of them manually in the ndx file and call g_dist for each of them ? Is there 
a short answer on that ? Maybe I missed the answer to that question in the 
forum ?!

greetings,
joern