[gmx-users] Re: Normal of the benzene and z axis.

[David van der Spoel]

Eudes Fileti wrote:
> Thanks for the reply.
> But I have tried use g_sorient tool and I could
> not see what the sequence of index give me a normal
> vector of the molecule of benzene.
three carbons in the ring.
> There another tool for this analysis?
> Bests
> eef
> _______________________________________
> Eudes Eterno Fileti
> Centro de Ciências Naturais e Humanas
> Universidade Federal do ABC — CCNH
> Av. dos Estados, 5001
> Santo André - SP - Brasil
> CEP 09210-971
> +55.11.4437-0196
> http://fileti.ufabc.edu.br
> 
> 
> On Tue, Jun 2, 2009 at 9:01 AM, Eudes Fileti <fileti at ufabc.edu.br 
> <mailto:fileti at ufabc.edu.br>> wrote:
> 
>     Dear gmx users;
>     How can I calculate the angle distribution for
>     the angle between the normal of the benzene and z axis?
>     Bests
>     eef
>     _______________________________________
>     Eudes Eterno Fileti
>     Centro de Ciências Naturais e Humanas
>     Universidade Federal do ABC — CCNH
>     Av. dos Estados, 5001
>     Santo André - SP - Brasil
>     CEP 09210-971
>     +55.11.4437-0196
>     http://fileti.ufabc.edu.br
> 
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Professor of Biology
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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