[gmx-users] protein running out of box

[sheerychen]

Hello, every body. I have running a MD for 10ns. However, after 5ns part of
protein will running out of the box and be located at other part of the
water box. And the whole structure seems ver strange. It seems that it was
caused by the mass translation but  I have used the comm_mode=Linear. Any
suggestions?

-- 
Zhen Chen,
Department of Bioprocess and Biosystem Engineering,
Hamburg University of Technology, Denickestr. 15, D-21071, Hamburg,Germany
Tel.: ++49 (0) 40 42878-3172, Fax: -3172, e-mail: zhen.chen at tuhh.de
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