[gmx-users] Re: Extending water in negative Z direction

[David van der Spoel]

Anirban Ghosh wrote:
> Hi ALL,
> 
> Thanks for the reply. I think what I mean will be more clear by just 
> having a look at the structure (attached). I have tried by increasing 
> the Z value, as suggested by David, but that only extends the water on 
> one side of the bilayer only and not on the other side (which I need). 
> Please have a look at the structure.
> Thanks a lot.

Please go back to the manual and read about PBC.



> 
> Regards,
> 
> 
>  
> *Anirban Ghosh*
> *Grade Based Engineer
> Bioinformatics Team
> Centre for Development of Advanced Computing (C-DAC)
> Pune, India
> *
> 
> 
> ------------------------------------------------------------------------
> Bollywood news, movie reviews, film trailers and more! Click here. 
> <http://in.rd.yahoo.com/tagline_movies_1/*http://in.movies.yahoo.com/?wm=n/> 
> 
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Professor of Biology
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++