[gmx-users] best way to generate .pdb files?

[Justin A. Lemkul]

Joseph Johnson wrote:
> I am currently using chembiodraw to draw my molecular structure but it 
> does not generate an adequate pdb file.  what is the best way to make 
> them?  i feel like my only hold back right now is the pdb file.
> 

Search the PDB for available ligands, or use the JME editor built into PRODRG.

-Justin

> thank you for your help :) 
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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