[gmx-users] gromacs-4.0.5 parallel run in 8 cpu: slow speed

Thamu asthamu at gmail.com
Thu Jun 11 08:35:10 CEST 2009


>
> Hi
>
> Recently I successfully installed the gromacs-4.0.5 mpi version.
> I could run in 8 cpu. but the speed is very slow.
> Total number of atoms in the system is 78424.
> while running all 8 cpu showing 95-100% CPU.
>
> How to speed up the calculation.
>
> Thanks
>
>
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