[gmx-users] trjconv -pbc nojump -center rect => does not work

[Chih-Ying Lin]

Hi
 I have a protein+several ligand in the simulation box.
 After 5ns, the protein drift to the right edge of the box and the
 ligand drift to the left edge of the box.

 I am very sure that the ligand has attached to the protein.


 with this command =>
 trjconv -pbc nojump -center rect



 so, how can i use trjconv command to see protein-ligand complex as a whole?

 Thank you
 Lin