[gmx-users] trjconv -pbc nojump -center rect => does not work

Chih-Ying Lin chihying2008 at gmail.com
Fri Jun 19 19:54:39 CEST 2009

 I have a protein+several ligand in the simulation box.
 After 5ns, the protein drift to the right edge of the box and the
 ligand drift to the left edge of the box.

 I am very sure that the ligand has attached to the protein.

 with this command =>
 trjconv -pbc nojump -center rect

 so, how can i use trjconv command to see protein-ligand complex as a whole?

 Thank you

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