[gmx-users] use of LAN for parallel processing

Alexandre Suman de Araujo asaraujo at if.sc.usp.br
Thu Jun 25 16:19:07 CEST 2009

Hi Mark

Do you know any site/paper/book which clearly discuss the use of other 
network paradigms (infiniband, myrinet, etc) to perform fair parallel MD 


Alexandre Suman de Araujo                                    *
Faculdade de Ciências Farmacêuticas de Ribeirão Preto        *
Universidade de São Paulo                                    *
Dep. de Física e Química                                     *
Grupo de Física Biológica     * e-mail: asaraujo at fcfrp.usp.br*
Av. do Café, s/n°             * e-mail: ale.suman at gmail.com  *
CEP: 14040-903                * Phone: +55 (16) 3602-4172    *
Ribeirão Preto, SP, Brasil    * Phone: +55 (16) 3602-4222    *

Mark Abraham escreveu:
> akalabya bissoyi wrote:
>> Thanks gromacs
>> for you replay, can any body provide tutorial/standard protocol   how 
>> to use of LAN for parallel processing.
> The canonical guide for doing installations of MPI versions of GROMACS 
> can be found here http://oldwww.gromacs.org/content/view/19/32/
> Mark
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