[gmx-users] 45a4 force field files to nucleic acids simulations

[Tsjerk Wassenaar]

Hi Guilherme,

These parameters are kept in the later series 53a5 and 53a6.

Cheers,

Tsjerk

On Fri, Jun 26, 2009 at 7:19 PM, Guilherme Menegon
Giesel<guilemg at gmail.com> wrote:
> Hello folks!!!
>
> I'm trying make simulations with nucleic acids with GROMOS. I know that was
> published the article " An improved nucleic acid parameter set for the
> GROMOS force field", showing new parameters to describe nucleic acids
> conformations. Such parameters was inserted in a new force field: ffG45a4.
> However, I didn't find in any place the files for this new force field.
>
> Does anyone has such files??
>
> or
>
> Should I complement the parameters in ffG45a3 to become DNA
> simulation possible?
>
> And therefore,
>
> How I do it?
>
> Thanks in advance!!!!
>
> BSc. Guilherme Menegon Giesel
> Grupo de Bioinformática Estrutural - Lab 202
> Centro de Biotecnologia, Prédio 43431
> Campus do Vale
> Universidade Federal do Rio Grande do Sul - UFRGS
> Av. Bento Gonçalves 9500
> Bairro Agronomia, Porto Alegre - RS
> CEP 91500-970, Brazil
> Caixa Postal 15005
> tel.: +55 51 3308 7770
> http://www.cbiot.ufrgs.br/bioinfo
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623