[gmx-users] 4.0.5 Installation error

[Manik Mayur]

On Mon, Jun 29, 2009 at 1:51 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:

> Manik Mayur wrote:
>
>> Hi,
>> I am trying to install GROMACS-4.0.5, but while making mpirun with the
>> option --enable-mpi it gives the following sets of errors:
>>
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `ah_find'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_ksignal'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_arr_append'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `ah_delete'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_errorstr'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_ssi_cr_did'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_rtrnameget'
>> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
>> `lam_mutex_trylock'
>> ...................
>> ...................
>>
>> The important thing to note is that I have successfully compiled and
>> installed mpi version of mdrun on the same machine, for GROMACS-4.0.4.
>> What am I missing here?
>>
>
> Probably you've changed/removed your MPI library between configure and
> make, or between versions of GROMACS, or something similar. Unpack a clean
> GROMACS tarball and start again with configure.
>

Not that I remember doing so, I will do the clean reinstall anyway.
Thanks,

Mark
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Manik Mayur
Graduate student
Microfluidics Lab
Dept. of Mechanical Engg.
IIT Kharagpur
INDIA
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